Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018073.1-P | Field mustard | cytosol | 98.5 | 98.5 |
| CDY21800 | Canola | cytosol | 91.98 | 91.52 |
| CDY39567 | Canola | cytosol | 89.97 | 88.42 |
| CDY39570 | Canola | cytosol | 76.69 | 74.82 |
| CDY48160 | Canola | cytosol | 76.44 | 74.57 |
| AT5G35600.1 | Thale cress | cytosol | 65.16 | 63.57 |
| CDY16736 | Canola | nucleus | 60.4 | 51.28 |
| CDY48127 | Canola | nucleus | 60.15 | 51.06 |
| CDX84385 | Canola | cytosol | 60.9 | 48.12 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 44.36 | 44.14 |
| CDX99186 | Canola | cytosol | 45.86 | 42.96 |
| CDY41500 | Canola | cytosol | 60.9 | 42.63 |
| CDY30008 | Canola | nucleus | 53.63 | 42.63 |
| CDY21119 | Canola | nucleus | 53.63 | 42.63 |
| CDY53952 | Canola | plastid | 21.3 | 34.98 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 18.55 | 18.64 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 16.54 | 17.65 |
| CDY06315 | Canola | cytosol | 16.29 | 16.84 |
| CDY22682 | Canola | cytosol | 16.29 | 16.84 |
| CDX68980 | Canola | mitochondrion, plastid | 16.29 | 15.29 |
| CDX75356 | Canola | plastid | 16.04 | 15.06 |
| CDX82341 | Canola | nucleus | 16.04 | 14.41 |
| CDY42846 | Canola | nucleus | 16.79 | 12.96 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 17.29 | 12.68 |
| CDY02173 | Canola | nucleus | 20.3 | 12.44 |
| CDY23088 | Canola | nucleus | 20.05 | 12.36 |
| CDX92243 | Canola | nucleus | 17.29 | 12.11 |
| CDY16823 | Canola | peroxisome | 19.3 | 11.85 |
| CDX87200 | Canola | peroxisome | 19.05 | 11.6 |
| CDY47012 | Canola | cytosol | 10.53 | 9.81 |
| CDY52901 | Canola | nucleus | 10.28 | 8.8 |
Protein Annotations
| MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | GO:A0A078IDK3 | UniProt:A0A078IDK3 | EnsemblPlants:CDY48157 | ProteinID:CDY48157 |
| ProteinID:CDY48157.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0046872 | GO:GO:0070932 | EnsemblPlantsGene:GSBRNA2T00088969001 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 |
| PANTHER:PTHR10625 | PANTHER:PTHR10625:SF144 | SUPFAM:SSF52768 | UniParc:UPI0004EDF2B4 | InterPro:Ureohydrolase_dom_sf | SEG:seg |
Description
BnaA06g16760DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078IDK3]
Coordinates
chrLK032757:-:74740..76664
Molecular Weight (calculated)
44387.8 Da
IEP (calculated)
6.190
GRAVY (calculated)
-0.275
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLASGPDG TKRRVSYFYE PTIGVGNGRE SQQIRTTHNL IGSYYLPRYM DIIRPRAAQP SDFTKFHSPE YISFLSSVTR RLKSATDPSF KRFNLDAWDS
101: PVFIGLFEYC RLYAGGSICA AEKLNRHEAD IAINWSGGMH RAKIDKACGF GYVNDVVLGI LELLKVFKRV LYIDIGYHHG EAVQEAFHKT DRVMTLSFHN
201: SGDQRRGDIT DYGVGKGEYY SLNAPLKNGL DDASFTTLFV PIIGKAMEVY QPEAIVLLCG PDSLSGDALG KFNLSVKGHG ACLGYIRSFN VPLLLLGGQG
301: HTLGNVARCW CYETGVAVGK EFNDDCPMIA DDDCFAPDYK LHIEPNHMEN LNTDGDIEKI KKTLLKQLSQ VIHAPSVQFQ DTPPISQVTE EAEEDMETR
101: PVFIGLFEYC RLYAGGSICA AEKLNRHEAD IAINWSGGMH RAKIDKACGF GYVNDVVLGI LELLKVFKRV LYIDIGYHHG EAVQEAFHKT DRVMTLSFHN
201: SGDQRRGDIT DYGVGKGEYY SLNAPLKNGL DDASFTTLFV PIIGKAMEVY QPEAIVLLCG PDSLSGDALG KFNLSVKGHG ACLGYIRSFN VPLLLLGGQG
301: HTLGNVARCW CYETGVAVGK EFNDDCPMIA DDDCFAPDYK LHIEPNHMEN LNTDGDIEKI KKTLLKQLSQ VIHAPSVQFQ DTPPISQVTE EAEEDMETR
001: MASLADGGKR RVSYFYEPMI GDYYYGVNQP TKPQRIRVTH NLILSYNLHR HMEINHPDLA DASDFEKFHS LEYINFLKSV TPETVTDPHP SVSENLKRFN
101: VDVDWDGPVF HNLFDYCRAY AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI EIGFPHGDEV EEAFKDTDRV
201: MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI
301: LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD
401: MEKRNDPRI
101: VDVDWDGPVF HNLFDYCRAY AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI EIGFPHGDEV EEAFKDTDRV
201: MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI
301: LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD
401: MEKRNDPRI
Arabidopsis Description
HDA7Histone deacetylase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.