CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001708.1-P	Field mustard	nucleus	47.21	52.76
CDX82341	Canola	nucleus	50.21	52.7
CDY24487	Canola	cytosol, nucleus, peroxisome	60.94	52.21
CDX92243	Canola	nucleus	60.94	49.82
AT3G18520.2	Thale cress	cytosol	60.09	49.65
KRH56687	Soybean	nucleus	35.19	39.33
KRH03799	Soybean	nucleus	45.49	39.04
PGSC0003DMT400014582	Potato	nucleus	46.14	35.25
Solyc03g119730.2.1	Tomato	nucleus	45.71	34.92
VIT_17s0000g04120.t01	Wine grape	nucleus	46.78	31.28
GSMUA_Achr8P20260_001	Banana	nucleus	41.42	30.49
TraesCS5D01G076100.1	Wheat	nucleus	39.7	30.23
TraesCS5A01G065300.1	Wheat	nucleus	39.7	30.13
TraesCS5B01G072100.1	Wheat	nucleus	39.27	29.8
HORVU5Hr1G017550.9	Barley	nucleus	38.84	29.48
OQU88485	Sorghum	nucleus	39.7	29.41
Zm00001d018864_P002	Maize	nucleus	38.84	29.24
Os07t0164100-01	Rice	nucleus	39.06	29.21
CDY22682	Canola	cytosol	14.59	17.62
CDY06315	Canola	cytosol	14.59	17.62
CDY47012	Canola	cytosol	15.45	16.82
CDY42846	Canola	nucleus	18.24	16.44
CDX75356	Canola	plastid	14.38	15.76
CDX68980	Canola	mitochondrion, plastid	14.16	15.53
CDY23088	Canola	nucleus	21.46	15.46
CDY02173	Canola	nucleus	21.03	15.05
CDY16823	Canola	peroxisome	19.74	14.15
CDX87200	Canola	peroxisome	19.74	14.05
CDX99186	Canola	cytosol	11.37	12.44
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	10.52	12.22
CDY48127	Canola	nucleus	11.59	11.49
CDY16736	Canola	nucleus	11.59	11.49
CDY30008	Canola	nucleus	11.59	10.76
CDY21119	Canola	nucleus	11.59	10.76
CDX84385	Canola	cytosol	11.59	10.69
CDY48157	Canola	cytosol	8.8	10.28
CDY21800	Canola	cytosol	8.58	9.98
CDY39567	Canola	cytosol	8.58	9.85
CDY41500	Canola	cytosol	11.59	9.47
CDY48160	Canola	cytosol	8.15	9.29
CDX80555	Canola	cytosol, golgi, nucleus, plastid	7.3	9.09
CDY39570	Canola	cytosol	7.94	9.05
CDX88212	Canola	cytosol, golgi, nucleus, plastid	7.3	8.56
CDY53952	Canola	plastid	3.0	5.76
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:A0A078ISV1	UniProt:A0A078ISV1	EnsemblPlants:CDY52901	ProteinID:CDY52901
ProteinID:CDY52901.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	EnsemblPlantsGene:GSBRNA2T00008074001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR001876
InterPro:IPR037138	PFAM:PF00850	PRINTS:PR01270	ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180
SUPFAM:SSF52768	UniParc:UPI0004EEBEC2	InterPro:Ureohydrolase_dom_sf	InterPro:Znf_RanBP2	SEG:seg	:

Description

BnaCnng23800DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078ISV1]

Coordinates

chrLK033140:-:62349..64801

Molecular Weight (calculated)

51300.0 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.439

Length

466 amino acids

Sequence
(BLAST)

001: MVVESLESSC EVSKRKHGDG GDGIRILLDE FSNGDVNSVS SVSSKRAKVS REMTFQEDSD WEPMQQTKPV ESVKWFCVNC TMPNPGDMVH CYMCGEHKES
101: GILSHGCFAS PFCKDNGLTQ VEEKRGGSSP STSSTAVGFD ERMWLHSEFE VKELPHVERP DRLPAIAASL ATAGVFPGRC FPIHAREITK QELQMVHTSE
201: HVDAVDTTSQ LQHSYFTSDT YANEYSARAA RLAAGLCADL AKEIFSGRVK NGFALVRPPG HHAGIKDAMG FCLHNNAAVA ALVAQAAGAR KVLIVDWDVH
301: HGNGTQEIFE KNKSVMYISL HRHEGGKFYP GTGAANERHM REAVVTQGAV DAEAVVVDEA PPSEFAFNFS YSGDGSLLDD KEACGELFRL FRLEPDPSRD
401: LSPPDETNLY NEYALSVARS IASVNAMVAE YENALRTARA DLEEQKKELE EMASLRRELE EERKSA

Best Arabidopsis Sequence Match ( AT3G18520.2 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKSEKS DEKEGCSGSD MVEMGTKEAF VQLSLGSYDF KIKVILESIL PNPS

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.