CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92243	Canola	nucleus	96.51	92.11
AT3G18520.2	Thale cress	cytosol	83.64	80.67
CDX82341	Canola	nucleus	65.26	79.95
KRH56687	Soybean	nucleus	53.49	69.78
KRH03799	Soybean	nucleus	61.58	61.69
CDY52901	Canola	nucleus	52.21	60.94
PGSC0003DMT400014582	Potato	nucleus	62.68	55.9
Solyc03g119730.2.1	Tomato	nucleus	62.5	55.74
VIT_17s0000g04120.t01	Wine grape	nucleus	64.89	50.65
GSMUA_Achr8P20260_001	Banana	nucleus	58.64	50.39
TraesCS5D01G076100.1	Wheat	nucleus	55.7	49.51
TraesCS5A01G065300.1	Wheat	nucleus	55.7	49.35
TraesCS5B01G072100.1	Wheat	nucleus	55.33	49.02
HORVU5Hr1G017550.9	Barley	nucleus	54.78	48.53
Os07t0164100-01	Rice	nucleus	54.6	47.67
Zm00001d018864_P002	Maize	nucleus	53.12	46.69
OQU88485	Sorghum	nucleus	53.31	46.1
CDY06315	Canola	cytosol	21.51	30.31
CDY22682	Canola	cytosol	21.51	30.31
CDX75356	Canola	plastid	20.96	26.82
CDX68980	Canola	mitochondrion, plastid	20.77	26.59
CDY42846	Canola	nucleus	25.18	26.5
CDY23088	Canola	nucleus	30.88	25.97
CDY02173	Canola	nucleus	31.07	25.96
CDY16823	Canola	peroxisome	29.6	24.77
CDX87200	Canola	peroxisome	29.6	24.58
CDY47012	Canola	cytosol	19.12	24.3
CDX99186	Canola	cytosol	15.07	19.25
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	14.15	19.2
CDY48127	Canola	nucleus	15.99	18.51
CDY16736	Canola	nucleus	15.99	18.51
CDY30008	Canola	nucleus	16.54	17.93
CDY21119	Canola	nucleus	16.54	17.93
CDX84385	Canola	cytosol	16.18	17.43
CDY48157	Canola	cytosol	12.68	17.29
CDY39567	Canola	cytosol	12.68	17.0
CDY21800	Canola	cytosol	12.5	16.96
CDY48160	Canola	cytosol	11.76	15.65
CDY41500	Canola	cytosol	16.18	15.44
CDY39570	Canola	cytosol	11.58	15.4
CDX88212	Canola	cytosol, golgi, nucleus, plastid	10.29	14.11
CDY53952	Canola	plastid	6.07	13.58
CDX80555	Canola	cytosol, golgi, nucleus, plastid	8.64	12.57
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:A0A078GH39	UniProt:A0A078GH39	EnsemblPlants:CDY24487	ProteinID:CDY24487
ProteinID:CDY24487.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932
EnsemblPlantsGene:GSBRNA2T00026773001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR001876	InterPro:IPR037138
PFAM:PF00850	PRINTS:PR01270	ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	SUPFAM:SSF52768
UniParc:UPI0004EE8C4B	InterPro:Ureohydrolase_dom_sf	InterPro:Znf_RanBP2	SEG:seg	:	:

Description

BnaC05g34670DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078GH39]

Coordinates

chrLK032159:+:498057..502013

Molecular Weight (calculated)

59527.4 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.235

Length

544 amino acids

Sequence
(BLAST)

001: MVVETLDSSC DGSKRKHANG GEETHLDELS NGDTGVSSSK RARVSRGEMT FQDIYGADAL LNEEDEEDDS DWEPVLQNTP VEFVKWCCVN CTMANPGDMV
101: HCYICGEHKE SGILRYGYLA SPFFKDTGLT EVEEKCGGSS SATSSTAVGF DERMLLHSEF EVKAQPHPER PDRLRAIAAS LATAGVFPGR CLPIHAREIT
201: KQELQMVHTS EHVDAVNITS QLLYSYFTTD TYANEYSARA ARLAAGLCAD LATEIYSGRV KNGFALVRPP GHHAGIKHAM GFCLHNNAAV AALVAQAAGA
301: RKVLIVDWDV HHGNGTQEIF EQNKSVLYIS LHRHEGGNFY PGTGAADEVG TNGAEGYCVN VPWSCGGVGD KDYIYAFQHV VLPIASQFSP DFVIVSAGFD
401: AARGDPLGCC DVTPAGYSRM TQMLGDICGG KMLVILEGGY NLRSISSSAT AVIKVLLGEN PENDDLPIAT TPSKAGLETV LDVMNIQMKF WPSLATAYSN
501: LLSEWETRLI ENKKNQVKRK LVRVPTWWKW GRKKFMYRFL SARI

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.