Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 80.67 | 83.64 |
| CDX92243 | Canola | nucleus | 80.85 | 80.0 |
| Bra022329.1-P | Field mustard | nucleus | 80.67 | 79.82 |
| CDX82341 | Canola | nucleus | 60.82 | 77.25 |
| Bra001708.1-P | Field mustard | nucleus | 54.26 | 73.38 |
| KRH56687 | Soybean | nucleus | 50.53 | 68.35 |
| KRH03799 | Soybean | nucleus | 58.69 | 60.96 |
| CDY52901 | Canola | nucleus | 49.65 | 60.09 |
| Solyc03g119730.2.1 | Tomato | nucleus | 59.04 | 54.59 |
| PGSC0003DMT400014582 | Potato | nucleus | 58.87 | 54.43 |
| VIT_17s0000g04120.t01 | Wine grape | nucleus | 62.77 | 50.79 |
| TraesCS5D01G076100.1 | Wheat | nucleus | 53.55 | 49.35 |
| TraesCS5A01G065300.1 | Wheat | nucleus | 53.55 | 49.19 |
| GSMUA_Achr8P20260_001 | Banana | nucleus | 55.14 | 49.13 |
| TraesCS5B01G072100.1 | Wheat | nucleus | 53.37 | 49.02 |
| HORVU5Hr1G017550.9 | Barley | nucleus | 52.84 | 48.53 |
| Os07t0164100-01 | Rice | nucleus | 53.01 | 47.99 |
| Zm00001d018864_P002 | Maize | nucleus | 51.06 | 46.53 |
| OQU88485 | Sorghum | nucleus | 51.42 | 46.1 |
| AT1G08460.1 | Thale cress | cytosol | 20.21 | 30.24 |
| AT4G33470.1 | Thale cress | plastid | 20.21 | 26.95 |
| AT5G61060.2 | Thale cress | cytosol | 29.96 | 25.45 |
| AT5G61070.1 | Thale cress | cytosol | 28.01 | 23.17 |
| AT4G38130.1 | Thale cress | nucleus | 17.02 | 19.16 |
| AT5G63110.1 | Thale cress | nucleus | 15.96 | 19.11 |
| AT3G44680.1 | Thale cress | cytosol | 14.36 | 19.01 |
| AT5G35600.1 | Thale cress | cytosol | 12.41 | 17.11 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 10.11 | 14.73 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 2.48 | 9.86 |
| AT3G44490.1 | Thale cress | cytosol | 2.66 | 9.49 |
| Os07t0164300-01 | Rice | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | EntrezGene:821382 | ProteinID:AEE76111.1 | ProteinID:ANM64186.1 | ArrayExpress:AT3G18520 |
| EnsemblPlantsGene:AT3G18520 | RefSeq:AT3G18520 | TAIR:AT3G18520 | RefSeq:AT3G18520-TAIR-G | EnsemblPlants:AT3G18520.2 | TAIR:AT3G18520.2 |
| Unigene:At.38541 | UniProt:F4J8S1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009294 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0032041 | GO:GO:0070932 | Symbol:HDA15 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR001876 | InterPro:IPR037138 | RefSeq:NP_001326232.1 | RefSeq:NP_850609.2 | PFAM:PF00850 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01270 | ScanProsite:PS01358 | PANTHER:PTHR10625 |
| PANTHER:PTHR10625:SF180 | SUPFAM:SSF52768 | UniParc:UPI00005DC2F6 | InterPro:Ureohydrolase_dom_sf | InterPro:Znf_RanBP2 | SEG:seg |
Description
HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
Coordinates
chr3:+:6361176..6365615
Molecular Weight (calculated)
60726.7 Da
IEP (calculated)
4.627
GRAVY (calculated)
-0.112
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKSEKS DEKEGCSGSD MVEMGTKEAF VQLSLGSYDF KIKVILESIL PNPS
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKSEKS DEKEGCSGSD MVEMGTKEAF VQLSLGSYDF KIKVILESIL PNPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.