Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75356 | Canola | plastid | 87.23 | 86.82 |
| CDX68980 | Canola | mitochondrion, plastid | 86.52 | 86.12 |
| Bra011444.1-P | Field mustard | golgi, vacuole | 86.05 | 81.07 |
| Solyc01g009110.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus, plastid | 48.94 | 78.11 |
| Zm00001d042974_P001 | Maize | mitochondrion | 37.83 | 74.42 |
| KRH59585 | Soybean | plastid | 67.14 | 67.62 |
| VIT_04s0044g01510.t01 | Wine grape | mitochondrion | 69.03 | 66.82 |
| EES01710 | Sorghum | plastid | 64.54 | 63.49 |
| Os12t0182700-01 | Rice | mitochondrion | 65.25 | 62.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.83 | 60.95 |
| TraesCS5A01G119300.2 | Wheat | mitochondrion | 63.36 | 60.36 |
| TraesCS5D01G126600.1 | Wheat | mitochondrion, plastid, vacuole | 62.88 | 59.91 |
| TraesCS5B01G121300.1 | Wheat | vacuole | 63.59 | 59.38 |
| HORVU5Hr1G037920.1 | Barley | cytosol | 63.36 | 59.29 |
| AT1G08460.1 | Thale cress | cytosol | 20.33 | 22.81 |
| AT3G18520.2 | Thale cress | cytosol | 26.95 | 20.21 |
| AT5G61060.2 | Thale cress | cytosol | 26.48 | 16.87 |
| AT5G61070.1 | Thale cress | cytosol | 25.77 | 15.98 |
| AT5G35600.1 | Thale cress | cytosol | 15.37 | 15.89 |
| AT5G63110.1 | Thale cress | nucleus | 17.26 | 15.5 |
| AT3G44680.1 | Thale cress | cytosol | 15.37 | 15.26 |
| AT4G38130.1 | Thale cress | nucleus | 17.97 | 15.17 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 12.53 | 13.7 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 2.13 | 6.34 |
| AT3G44490.1 | Thale cress | cytosol | 2.36 | 6.33 |
Protein Annotations
| MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | EntrezGene:829484 | UniProt:A0A178V1U6 | ProteinID:AEE86231.1 | ArrayExpress:AT4G33470 |
| EnsemblPlantsGene:AT4G33470 | RefSeq:AT4G33470 | TAIR:AT4G33470 | RefSeq:AT4G33470-TAIR-G | EnsemblPlants:AT4G33470.1 | TAIR:AT4G33470.1 |
| EMBL:AY052234 | EMBL:AY113069 | Unigene:At.26427 | ProteinID:CAB38805.1 | ProteinID:CAB80064.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 | GO:GO:0042903 | GO:GO:0043014 | GO:GO:0043621 |
| GO:GO:0048487 | GO:GO:0051721 | GO:GO:0070932 | GO:GO:0090042 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | RefSeq:NP_567921.1 | ProteinID:OAO99062.1 | PFAM:PF00850 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR01270 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF175 |
| UniProt:Q941D6 | SUPFAM:SSF52768 | UniParc:UPI00000A1AA2 | InterPro:Ureohydrolase_dom_sf | Symbol:hda14 | : |
Description
HDA14Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A178V1U6]
Coordinates
chr4:-:16102595..16105550
Molecular Weight (calculated)
45579.4 Da
IEP (calculated)
6.643
GRAVY (calculated)
-0.055
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMALIVRPF FVPGSAGISG SRNICKKNQW RKYLLKPSGS SINCSFSTEK NPLLPSIQQL ADARLIYSVS AALGHNKESH PECSARVPAI VNALEMNELT
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.