CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56687	Soybean	nucleus	70.53	91.85
CDX82341	Canola	nucleus	52.12	63.74
CDY24487	Canola	cytosol, nucleus, peroxisome	61.69	61.58
CDX92243	Canola	nucleus	61.88	58.95
AT3G18520.2	Thale cress	cytosol	60.96	58.69
Bra022329.1-P	Field mustard	nucleus	61.51	58.6
Bra001708.1-P	Field mustard	nucleus	44.57	58.03
PGSC0003DMT400014582	Potato	nucleus	65.01	57.87
Solyc03g119730.2.1	Tomato	nucleus	64.09	57.05
VIT_17s0000g04120.t01	Wine grape	nucleus	69.43	54.09
GSMUA_Achr8P20260_001	Banana	nucleus	60.22	51.66
TraesCS5D01G076100.1	Wheat	nucleus	56.35	50.0
TraesCS5A01G065300.1	Wheat	nucleus	56.35	49.84
TraesCS5B01G072100.1	Wheat	nucleus	56.17	49.67
HORVU5Hr1G017550.9	Barley	nucleus	55.43	49.02
Zm00001d018864_P002	Maize	nucleus	55.25	48.47
Os07t0164100-01	Rice	nucleus	55.43	48.31
OQU88485	Sorghum	nucleus	55.06	47.54
CDY52901	Canola	nucleus	39.04	45.49
KRH26679	Soybean	cytosol	20.44	29.13
KRH59585	Soybean	plastid	20.99	27.14
KRH54336	Soybean	cytosol, nucleus, plastid	7.0	23.75
KRH56821	Soybean	nucleus	28.55	23.63
KRH03123	Soybean	cytosol	27.99	23.17
KRH30495	Soybean	cytosol	16.21	20.51
KRH25183	Soybean	cytosol	16.21	20.51
KRH03236	Soybean	nucleus	15.84	18.22
KRH57122	Soybean	nucleus	15.84	18.07
KRH63609	Soybean	cytosol	15.29	17.85
KRH51318	Soybean	nucleus	16.21	17.71
KRH77972	Soybean	nucleus	16.02	17.5
KRH60609	Soybean	nucleus	16.02	17.5
KRH27562	Soybean	nucleus	16.02	17.5
KRH05486	Soybean	cytosol	10.68	16.67
KRH63610	Soybean	cytosol	5.52	15.23
KRH54335	Soybean	cytosol, nucleus, plastid	5.89	13.68
KRH16462	Soybean	nucleus	0.92	6.41
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

EntrezGene:100802870	MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EMBL:ACUP02010363	EnsemblPlantsGene:GLYMA_17G120900	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	UniProt:I1MUF8	InterPro:IPR001876	InterPro:IPR037138	EnsemblPlants:KRH03799	ProteinID:KRH03799
ProteinID:KRH03799.1	PFAM:PF00850	PRINTS:PR01270	ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180
SUPFAM:SSF52768	UniParc:UPI000295B649	InterPro:Ureohydrolase_dom_sf	InterPro:Znf_RanBP2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:9629771..9638880

Molecular Weight (calculated)

59609.8 Da

IEP (calculated)

6.326

GRAVY (calculated)

-0.188

Length

543 amino acids

Sequence
(BLAST)

001: MVSGALKTTE NSLHKQASQV SDANDAVADP DIPAKRARLQ KEQKDLTFQD IYQNDGVFDD EDSDWEPFQL HKCMDFEIKK WFCRNCTMVN LDHDDCCYIC
101: GEHTDSKILS HGFFASPLAQ DENLTEVQGI AKGLKDVGSQ ELVANSSTAI GFDERMLLHA EVEKKSTLHP ERPDRLQAIA ASLARAGIFP GKCYSIPARE
201: ITPEELITVH SLEHIESVEV TSESLSSYFT SDTYANEHSA LAARLAAGLC ADLASAIVSE RAKNGFALVR PPGHHAGVRH AMGFCLHNNA AVAALAAQAA
301: GARKVLILDW DVHHGNGTQE IFEQNKSVLY ISLHRHEGGK FYPGTGAAEE VGSMGAEGYC VNIPWSRGGV GDNDYIFSFQ HVVLPIAAEF NPDFTIVSAG
401: FDAARGDPLG CCDITPSGYA HMTHMLNALS GGKLLVILEG GYNLRSISSS ATAVIKVLLG ESPGCELENS FPSKAGLQTV LEVLKIQMNF WPALGPIFVT
501: LESQWRVYCF GKKRKHIKKR HRILVPMWRW GRKFIIPFSE RPP

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.