CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g00910.t01	Wine grape	plastid	80.75	78.27
Solyc08g065350.2.1	Tomato	cytosol	77.87	78.1
PGSC0003DMT400076991	Potato	cytosol	78.16	76.84
Bra009877.1-P	Field mustard	cytosol	73.85	73.64
Os06t0571100-01	Rice	plastid	72.99	72.16
TraesCS7B01G266000.1	Wheat	plastid	71.84	70.82
TraesCS7A01G362600.1	Wheat	plastid	72.13	70.7
TraesCS7D01G360500.1	Wheat	plastid	71.55	70.54
KXG29820	Sorghum	cytosol	70.4	69.6
AT5G26040.2	Thale cress	endoplasmic reticulum	76.72	68.99
EER89968	Sorghum	plastid	68.97	68.57
CDX88212	Canola	cytosol, golgi, nucleus, plastid	74.14	64.99
CDX80555	Canola	cytosol, golgi, nucleus, plastid	68.97	64.17
Zm00001d046348_P003	Maize	plastid	69.54	63.52
GSMUA_Achr10P...	Banana	plastid	77.3	61.28
HORVU0Hr1G021730.1	Barley	cytosol	19.83	57.5
KRH63610	Soybean	cytosol	13.22	23.35
KRH54335	Soybean	cytosol, nucleus, plastid	14.66	21.79
KRH63609	Soybean	cytosol	25.0	18.71
KRH03236	Soybean	nucleus	25.29	18.64
KRH57122	Soybean	nucleus	24.71	18.07
KRH25183	Soybean	cytosol	22.13	17.95
KRH30495	Soybean	cytosol	21.84	17.72
KRH27562	Soybean	nucleus	25.0	17.5
KRH77972	Soybean	nucleus	25.0	17.5
KRH51318	Soybean	nucleus	23.85	16.7
KRH60609	Soybean	nucleus	23.85	16.7
KRH54336	Soybean	cytosol, nucleus, plastid	7.47	16.25
KRH26679	Soybean	cytosol	15.8	14.44
KRH56687	Soybean	nucleus	17.24	14.39
KRH59585	Soybean	plastid	16.95	14.05
KRH56821	Soybean	nucleus	20.4	10.82
KRH03799	Soybean	nucleus	16.67	10.68
KRH03123	Soybean	cytosol	20.11	10.67
KRH16462	Soybean	nucleus	0.29	1.28

Protein Annotations

EntrezGene:100781276	MapMan:12.3.2.1.3	Gene3D:3.40.800.20	EMBL:ACUP02010746	EnsemblPlantsGene:GLYMA_17G229600	GO:GO:0003674
GO:GO:0003824	GO:GO:0016787	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	UniProt:I1MXC3
InterPro:IPR037138	EnsemblPlants:KRH05486	ProteinID:KRH05486	ProteinID:KRH05486.1	ProteinID:KRH05487.1	PFAM:PF00850
PRINTS:PR01270	PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	SUPFAM:SSF52768	UniParc:UPI000233E3B0	InterPro:Ureohydrolase_dom_sf

Description

hypothetical protein

Coordinates

chr17:+:38450991..38457056

Molecular Weight (calculated)

38500.5 Da

IEP (calculated)

6.711

GRAVY (calculated)

-0.026

Length

348 amino acids

Sequence
(BLAST)

001: MSSSSANDAE ALRRNRILSS KLYFDVSPSK VPLIYSASYD IEFLGIEKLH PFDSSKWGRI CGFLVSFGIL DKKCVVEPLE ASKDDLLVVH SESYLNTLKQ
101: SSKVAMIVEV PPVALIPNCL VQQKVLFPFR KQVGGTILAA KLAKERGWAI NMGGGFHHCS AQKGGGFCAY ADISLCIHFA FVRLNISRVM IIDLDAHQGN
201: GHEMDFAYDS RVYILDMYNP GIYPLDYEAR NYINQKVEVK SGTVTEEYLQ KLDEALEVAG HRFNPELVIY NAGTDILEGD PLGRLEISPE GITLRDEKVF
301: RFAREKNIPI VMLTSGGYMK SSAGVIADSI VNLSKKCLIE TSGAPKST

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.