Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g00910.t01 | Wine grape | plastid | 65.15 | 79.67 |
| Os06t0571100-01 | Rice | plastid | 63.55 | 79.26 |
| Solyc08g065350.2.1 | Tomato | cytosol | 62.41 | 78.96 |
| KRH05486 | Soybean | cytosol | 61.28 | 77.3 |
| PGSC0003DMT400076991 | Potato | cytosol | 62.19 | 77.12 |
| EER89968 | Sorghum | plastid | 60.36 | 75.71 |
| TraesCS7D01G360500.1 | Wheat | plastid | 60.36 | 75.07 |
| TraesCS7B01G266000.1 | Wheat | plastid | 59.91 | 74.5 |
| TraesCS7A01G362600.1 | Wheat | plastid | 60.14 | 74.37 |
| KXG29820 | Sorghum | cytosol | 58.77 | 73.3 |
| Bra009877.1-P | Field mustard | cytosol | 56.49 | 71.06 |
| Zm00001d046348_P003 | Maize | plastid | 60.36 | 69.55 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 60.59 | 68.73 |
| GSMUA_Achr7P09060_001 | Banana | mitochondrion | 7.74 | 65.38 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 57.86 | 63.98 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 53.3 | 62.57 |
| HORVU0Hr1G021730.1 | Barley | cytosol | 15.95 | 58.33 |
| GSMUA_Achr7P09050_001 | Banana | cytosol | 36.45 | 56.94 |
| GSMUA_Achr2P06520_001 | Banana | cytosol | 18.22 | 21.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.91 | 21.07 |
| GSMUA_Achr8P04190_001 | Banana | cytosol, nucleus, plasma membrane | 20.05 | 20.42 |
| GSMUA_Achr1P14440_001 | Banana | cytosol | 19.13 | 20.19 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 16.17 | 19.61 |
| GSMUA_Achr6P17260_001 | Banana | plastid | 18.91 | 17.29 |
| GSMUA_Achr5P06320_001 | Banana | nucleus | 18.0 | 17.03 |
| GSMUA_Achr2P19590_001 | Banana | nucleus | 17.31 | 16.7 |
| GSMUA_Achr6P19520_001 | Banana | cytosol | 13.21 | 15.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.9 | 13.77 |
| GSMUA_Achr4P03250_001 | Banana | cytosol | 15.26 | 10.09 |
| GSMUA_Achr8P20260_001 | Banana | nucleus | 14.35 | 9.95 |
Protein Annotations
| MapMan:12.3.2.1.3 | Gene3D:3.40.800.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0070932 | EnsemblPlantsGene:GSMUA_Achr10G28050_001 | EnsemblPlants:GSMUA_Achr10P28050_001 | EnsemblPlants:GSMUA_Achr10T28050_001 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | UniProt:M0RM29 | PFAM:PF00850 | PRINTS:PR01270 | PANTHER:PTHR43497 |
| PANTHER:PTHR43497:SF2 | SUPFAM:SSF52768 | UniParc:UPI0002961BAC | InterPro:Ureohydrolase_dom_sf | SEG:seg | : |
Description
Histone deacetylase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G28050_001]
Coordinates
chr10:-:30970615..30978944
Molecular Weight (calculated)
48230.4 Da
IEP (calculated)
8.438
GRAVY (calculated)
0.088
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASGSPVSA LATSLRCLAF ELLRVFAAPS LRIQIFSGLT TRNILLFPPS LSSLSLSQIS PFWFVRSFTP ASAMAASSSS PEAAPTGPAD AISRDRILSS
101: NLYFDVPPSK VPVIYSSSYD IAFFGIEKLH PFDSSKWGRI CQFLIKEGFL DKKQTVEPLE ASKDDLLVVH SESYLSSLKS SLNVAIIIEV PPVSLLPNCL
201: VQNKVLYPFR KQVGGSILAA KLAKERGWAI NIGGGFHHCS AEKGGGFCAY ADISLCIQFA FVLLNISRVM IIDLDAHQGN GHEIDFSNDR RVYILDMYNA
301: GIYPFCLLPT MSITYNDFEA KRYIDQKVEL ASGTKTKEYL DKLDEALKVA RNNFNPELVV YNAGTDILDG DPLGRLKISP DGVMTRDEKV FRFAREKNIP
401: LLMLTSGGYM KSSARVIADS IINLSKKNLI ALDSPLGRK
101: NLYFDVPPSK VPVIYSSSYD IAFFGIEKLH PFDSSKWGRI CQFLIKEGFL DKKQTVEPLE ASKDDLLVVH SESYLSSLKS SLNVAIIIEV PPVSLLPNCL
201: VQNKVLYPFR KQVGGSILAA KLAKERGWAI NIGGGFHHCS AEKGGGFCAY ADISLCIQFA FVLLNISRVM IIDLDAHQGN GHEIDFSNDR RVYILDMYNA
301: GIYPFCLLPT MSITYNDFEA KRYIDQKVEL ASGTKTKEYL DKLDEALKVA RNNFNPELVV YNAGTDILDG DPLGRLKISP DGVMTRDEKV FRFAREKNIP
401: LLMLTSGGYM KSSARVIADS IINLSKKNLI ALDSPLGRK
001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
Arabidopsis Description
HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.