Factsheet for GSMUA_Achr2P06520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P23850_001
GSMUA_Achr5P26930_001
GSMUA_Achr5P28930_001
GSMUA_Achr6P33630_001
GSMUA_Achr8P02350_001
GSMUA_Achr9P03690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	GSMUA_Achr5P28930_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr6P33630_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr8P02350_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr9P03690_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr3P23850_001	AT3G62980.1	12445118
AT5G63110.1	GSMUA_Achr5P26930_001	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	79.95	80.39
KRH54336	Soybean	cytosol, nucleus, plastid	33.79	76.88
VIT_17s0000g09070.t01	Wine grape	cytosol	82.42	64.66
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	79.4	63.1
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	78.85	62.66
TraesCS6A01G181100.1	Wheat	cytosol	77.47	61.57
TraesCS6D01G168400.1	Wheat	cytosol	77.47	61.57
PGSC0003DMT400069419	Potato	nucleus	79.4	61.36
TraesCS6B01G210200.1	Wheat	cytosol	77.2	61.35
HORVU6Hr1G038010.6	Barley	cytosol	77.2	61.22
Solyc06g071680.2.1	Tomato	cytosol	78.57	60.72
KRH03236	Soybean	nucleus	78.3	60.38
KRH57122	Soybean	nucleus	78.3	59.87
KRH63609	Soybean	cytosol	76.37	59.78
CDY16736	Canola	nucleus	76.92	59.57
Bra035858.1-P	Field mustard	nucleus	76.92	59.57
AT5G63110.1	Thale cress	nucleus	76.92	59.45
CDY48127	Canola	nucleus	76.65	59.36
Zm00001d050139_P001	Maize	nucleus	79.12	58.66
Solyc03g112410.1.1	Tomato	cytosol	71.7	58.13
PGSC0003DMT400046818	Potato	cytosol	71.7	57.24
CDX84385	Canola	cytosol	76.65	55.25
GSMUA_AchrUn_...	Banana	cytosol	57.14	52.79
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	59.89	50.58
CDY41500	Canola	cytosol	76.92	49.12
Bra038607.1-P	Field mustard	cytosol	76.1	48.6
GSMUA_Achr2P19590_001	Banana	nucleus	59.62	47.69
GSMUA_Achr5P06320_001	Banana	nucleus	60.16	47.2
GSMUA_Achr1P14440_001	Banana	cytosol	53.02	46.39
GSMUA_Achr6P17260_001	Banana	plastid	57.69	43.75
KRH54335	Soybean	cytosol, nucleus, plastid	28.02	43.59
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	19.23	35.71
GSMUA_Achr7P09060_001	Banana	mitochondrion	3.02	21.15
GSMUA_Achr6P19520_001	Banana	cytosol	20.05	18.91
GSMUA_Achr10P...	Banana	plastid	21.98	18.22
GSMUA_AchrUn_...	Banana	cytosol	19.51	16.03
GSMUA_Achr7P09050_001	Banana	cytosol	11.54	14.95
GSMUA_Achr4P03250_001	Banana	cytosol	23.35	12.8
GSMUA_Achr8P20260_001	Banana	nucleus	21.43	12.32

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr2G06520_001	EnsemblPlants:GSMUA_Achr2P06520_001	EnsemblPlants:GSMUA_Achr2T06520_001
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M0S5P3
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144
SUPFAM:SSF52768	UniParc:UPI000295E3E4	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:

Description

Histone deacetylase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G06520_001]

Coordinates

chr2:-:11286038..11292674

Molecular Weight (calculated)

41016.2 Da

IEP (calculated)

4.545

GRAVY (calculated)

-0.395

Length

364 amino acids

Sequence
(BLAST)

001: MEVSRPFPAS AADIRRFHSD DYVDFLASRF NVGEDCPVFD GLFEFCQASA GGSIGAAVKI NRGDADIAIN WAGGLHHAKK CEASGFCYVN DIVLGILELL
101: KYHRRVLYVD IDIHHGDGVE EAFFTTDRVM TVSFHKYGDF FPGTGHIKDV GFGQGKYYAL NVPLNDGMDD ESFRGLFRPI IQKVMAVYQP DAVVLQCGAD
201: SLAGDRLGCF NLSVKGHADC LRYLRSFNVP MLVLGGGGYT MRNVARCWCY ETAVAIGVEP DNQLPYNEYY EYFGPDYDLH IRPRSMENKN SPKELEDIRN
301: MLMDYLSKIE HAPSVQFQSR PPDTEAPEEE DEDMEHRMQP KLWSGEYYDS DSEECPKPEP ESVP

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.