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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:
  • cytosol 3
  • nucleus 3
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytoskeleton, cytosol, nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER95129
EES01769
EES18318
KXG21312

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63110.1 EER95129 AT2G39940.1 12445118
AT5G63110.1 EES01769 AT2G39940.1 12445118
AT5G63110.1 EES18318 AT2G39940.1 12445118
AT5G63110.1 KXG21312 AT3G62980.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os08t0344100-01 Rice cytoskeleton, cytosol, nucleus 91.48 91.48
TraesCS6D01G168400.1 Wheat cytosol 91.05 91.05
TraesCS6A01G181100.1 Wheat cytosol 91.05 91.05
TraesCS6B01G210200.1 Wheat cytosol 90.83 90.83
HORVU6Hr1G038010.6 Barley cytosol 89.96 89.76
Zm00001d050139_P001 Maize nucleus 96.07 89.61
GSMUA_Achr2P06520_001 Banana cytosol 62.66 78.85
GSMUA_AchrUn_... Banana mitochondrion 59.39 75.14
KRH54336 Soybean cytosol, nucleus, plastid 25.76 73.75
VIT_17s0000g09070.t01 Wine grape cytosol 72.93 71.98
KRH63609 Soybean cytosol 71.18 70.11
KRH03236 Soybean nucleus 71.83 69.7
PGSC0003DMT400069419 Potato nucleus 71.62 69.64
Solyc06g071680.2.1 Tomato cytosol 71.18 69.21
KRH57122 Soybean nucleus 71.83 69.12
AT5G63110.1 Thale cress nucleus 70.74 68.79
CDY48127 Canola nucleus 69.43 67.66
Bra035858.1-P Field mustard nucleus 69.21 67.45
CDY16736 Canola nucleus 69.21 67.45
Solyc03g112410.1.1 Tomato cytosol 62.66 63.92
CDX84385 Canola cytosol 70.31 63.76
PGSC0003DMT400046818 Potato cytosol 63.32 63.6
KRH54335 Soybean cytosol, nucleus, plastid 31.22 61.11
CDY41500 Canola cytosol 70.31 56.49
Bra038607.1-P Field mustard cytosol 69.65 55.96
KXG20269 Sorghum nucleus 61.79 54.63
EES04741 Sorghum nucleus 60.48 53.58
EES10729 Sorghum cytosol 49.78 53.02
Zm00001d024221_P001 Maize cytosol, nucleus, plastid, vacuole 21.18 49.49
OQU87074 Sorghum cytosol 44.54 41.46
OQU83122 Sorghum cytosol 29.04 37.15
KXG29820 Sorghum cytosol 20.31 26.42
EER89968 Sorghum plastid 19.87 26.0
EES19606 Sorghum cytosol 18.78 22.05
EES01710 Sorghum plastid 17.25 18.37
EER97493 Sorghum plastid 22.93 14.94
OQU88485 Sorghum nucleus 17.69 12.88
Protein Annotations
MapMan:12.3.2.1.1Gene3D:3.40.800.20EntrezGene:8073075UniProt:C5YKG8EnsemblPlants:EES13744ProteinID:EES13744
ProteinID:EES13744.1GO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0004407GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006139
GO:GO:0006325GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0006950GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009536GO:GO:0009628GO:GO:0009651
GO:GO:0009719GO:GO:0009737GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009941
GO:GO:0009987GO:GO:0010228GO:GO:0010431GO:GO:0016043GO:GO:0016441GO:GO:0016458
GO:GO:0016569GO:GO:0016575GO:GO:0016787GO:GO:0019538GO:GO:0032041GO:GO:0040029
GO:GO:0046872GO:GO:0070932InterPro:His_deacetylseInterPro:His_deacetylse_1InterPro:His_deacetylse_domInterPro:His_deacetylse_dom_sf
InterPro:IPR037138PFAM:PF00850PIRSF:PIRSF037913PRINTS:PR01270PRINTS:PR01271PANTHER:PTHR10625
PANTHER:PTHR10625:SF144EnsemblPlantsGene:SORBI_3007G114000SUPFAM:SSF52768unigene:Sbi.1660UniParc:UPI0001A87E82InterPro:Ureohydrolase_dom_sf
RefSeq:XP_002444249.1:::::
Description
hypothetical protein
Coordinates
chr7:+:47337646..47352128
Molecular Weight (calculated)
50954.9 Da
IEP (calculated)
5.533
GRAVY (calculated)
-0.417
Length
458 amino acids
Sequence
(BLAST)
001: MAASGEGASL PSPAGGEDAH RRRVSYFYEP SIGDYYYGQG HPMKPHRIRM AHSLVVHYGL HRLLELSRPY PASEADIRRF HSDDYVAFLA SATGNPSVLD
101: PRAVKRFNVG EDCPVFDGLF PFCQASAGGS IGAAVKLNRG DADITVNWAG GLHHAKKSEA SGFCYVNDIV LAILELLKFH RRVLYVDIDV HHGDGVEEAF
201: FTTNRVMTVS FHKYGDFFPG TGHITDVGAA EGKHYALNVP LSDGIDDATF RDLFQCIIKK VMEVYQPDVV VLQCGADSLA GDRLGCFNLS VKGHADCLRF
301: LRSYNVPMMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNDYYEYF GPDYILHIQP KSVENQNTTK DLENIKNMIL ESLSKIEHVP STQFHDRPSD
401: PEAPEEKEED MDKRPAQRSR LWSGGAYDSD TEDPDNLKSE SKDVTANLQM KDEPKNDL
Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)
001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
Arabidopsis Description
HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.