Factsheet for Solyc06g071680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069419	Potato	nucleus	98.94	98.94
VIT_17s0000g09070.t01	Wine grape	cytosol	81.1	82.33
GSMUA_Achr2P06520_001	Banana	cytosol	60.72	78.57
KRH03236	Soybean	nucleus	78.34	78.18
KRH57122	Soybean	nucleus	78.77	77.94
KRH54336	Soybean	cytosol, nucleus, plastid	26.11	76.88
KRH63609	Soybean	cytosol	75.58	76.56
Solyc03g112410.1.1	Tomato	cytosol	70.28	73.72
GSMUA_AchrUn_...	Banana	mitochondrion	56.05	72.93
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	69.21	71.18
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	69.21	71.18
TraesCS6D01G168400.1	Wheat	cytosol	69.21	71.18
TraesCS6B01G210200.1	Wheat	cytosol	69.21	71.18
TraesCS6A01G181100.1	Wheat	cytosol	69.21	71.18
HORVU6Hr1G038010.6	Barley	cytosol	68.79	70.59
Zm00001d050139_P001	Maize	nucleus	69.21	66.4
KRH54335	Soybean	cytosol, nucleus, plastid	32.48	65.38
Solyc09g091440.2.1	Tomato	nucleus	61.57	58.23
Solyc11g067020.1.1	Tomato	cytosol	49.04	53.72
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	17.41	41.84
Solyc08g065350.2.1	Tomato	cytosol	18.05	24.5
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	12.95	23.02
Solyc06g074080.2.1	Tomato	cytosol	16.56	20.26
Solyc03g115150.2.1	Tomato	cytosol	19.11	13.91
Solyc03g119730.2.1	Tomato	nucleus	15.71	12.13

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:K4C8P0	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	EnsemblPlantsGene:Solyc06g071680.2	EnsemblPlants:Solyc06g071680.2.1
UniParc:UPI00027672CC	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:K4C8P0]

Coordinates

chr6:-:44145599..44150103

Molecular Weight (calculated)

53076.2 Da

IEP (calculated)

5.310

GRAVY (calculated)

-0.535

Length

471 amino acids

Sequence
(BLAST)

001: MDSSTVDGGA SLPSTGTDAR KRRVSYFYEP TIGDYYYGQG HPMKPHRIRM AHNLIVNYYL HRRMEISRPF PAGEDDIRRF HSPDYVDFLA TVSPETLHDH
101: THSRHLKRFN VGEDCPVFDG LFGFCQASAG GSIGAAVKLN RQDADITINW AGGLHHAKKS EASGFCYVND IVLGILELLK VHKRVLYIDI DIHHGDGVEE
201: AFFTTDRVMT VSFHKFGDFF PGTGHIKDIG ANQGKYYALN VPLHDGMDDD SFGRLFRPTI QKVMEVYQPE AVVLQCGADS LAGDRLGCFN LSVKGHAACL
301: RYLRSFNVPL MVLGGGGYTI RNVARCWCYE TAVAVGVEPE NKLPYNEYYE YFGPDYTLHV EPIPMENLNS PRDLEKMRNI LLEQISQLPH APSVPFQTTP
401: STTEVPEEKE ENMDRRPKPR IWNGDGYESD ADEDEKPRQR SSDSNLTPVE SSDMRDVDDQ ANADDMVDDH P

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.