Factsheet for Solyc03g112410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g009260.1.1
Solyc05g052620.2.1
Solyc06g007830.1.1
Solyc06g007840.2.1
Solyc06g008440.1.1
Solyc06g008460.1.1
Solyc06g008470.1.1
Solyc06g008780.1.1
Solyc06g008810.2.1
Solyc06g084490.1.1
Solyc09g074520.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	Solyc05g052620.2.1	AT2G39940.1	12445118
AT5G63110.1	Solyc05g009260.1.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g007830.1.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g007840.2.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g008440.1.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g008460.1.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g008470.1.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g008780.1.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g008810.2.1	AT3G62980.1	12445118
AT5G63110.1	Solyc06g084490.1.1	AT3G62980.1	12445118
AT5G63110.1	Solyc09g074520.2.1	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046818	Potato	cytosol	95.1	93.64
KRH54336	Soybean	cytosol, nucleus, plastid	26.06	73.12
GSMUA_Achr2P06520_001	Banana	cytosol	58.13	71.7
Solyc06g071680.2.1	Tomato	cytosol	73.72	70.28
KRH03236	Soybean	nucleus	72.16	68.64
GSMUA_AchrUn_...	Banana	mitochondrion	55.23	68.51
KRH57122	Soybean	nucleus	72.16	68.07
KRH63609	Soybean	cytosol	69.71	67.31
Bra035858.1-P	Field mustard	nucleus	68.6	65.53
CDY48127	Canola	nucleus	68.6	65.53
CDY16736	Canola	nucleus	68.6	65.53
AT5G63110.1	Thale cress	nucleus	68.37	65.18
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	63.92	62.66
TraesCS6D01G168400.1	Wheat	cytosol	63.03	61.79
TraesCS6B01G210200.1	Wheat	cytosol	63.03	61.79
TraesCS6A01G181100.1	Wheat	cytosol	63.03	61.79
HORVU6Hr1G038010.6	Barley	cytosol	62.81	61.44
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	62.58	61.35
CDX84385	Canola	cytosol	68.82	61.19
Zm00001d050139_P001	Maize	nucleus	63.92	58.45
KRH54335	Soybean	cytosol, nucleus, plastid	29.84	57.27
CDY41500	Canola	cytosol	68.82	54.21
Bra038607.1-P	Field mustard	cytosol	68.15	53.68
Solyc09g091440.2.1	Tomato	nucleus	59.47	53.61
Solyc11g067020.1.1	Tomato	cytosol	50.78	53.02
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	16.48	37.76
Solyc08g065350.2.1	Tomato	cytosol	19.15	24.78
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	14.03	23.77
Solyc06g074080.2.1	Tomato	cytosol	17.37	20.26
Solyc03g115150.2.1	Tomato	cytosol	19.15	13.29
Solyc03g119730.2.1	Tomato	nucleus	18.04	13.28

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009941	GO:GO:0009987	GO:GO:0010228	GO:GO:0010431	GO:GO:0016043	GO:GO:0016441
GO:GO:0016458	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0040029	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:K4BK95	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	EnsemblPlantsGene:Solyc03g112410.1	EnsemblPlants:Solyc03g112410.1.1
UniParc:UPI00027674C1	InterPro:Ureohydrolase_dom_sf	:	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:K4BK95]

Coordinates

chr3:+:62815707..62818123

Molecular Weight (calculated)

50540.2 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.384

Length

449 amino acids

Sequence
(BLAST)

001: MDSSVVEGGA SLRSTGTDAT KRRVSYFFDS SIGEYDYGEG HLMKPHRIRV AHNLILNYNL HRKMEIIEPF PATKEEIGSF HSSDYVEFLS SVSPETINDK
101: YDSYQRRRFN VGLDSESFDC PVFYGLFDFC QTSSGGSIGA AAKLNRNEAD IAINWAGGLH HAKKSEASGF CYVNDIVLGI LELLKVHKRV LYVDIDVHHG
201: DGVEEAFFTT DRVMTVSFHK FGDFFPGTGH IKDIGASTGK YYALNAPLGN GIDDESFRSL FRPVIQKVME VYQPEAVVVQ CGADSLAGDR LGVFNLSVKG
301: HADCIRFLRS FNVPLMMLGG GGYTVKNVAR CWCYETAVAV GVELDNDLPY NEFYEYFAPD YILYHESLHM KNENSPSELE RIRNTLLEQL SRLPHVPSVP
401: FQVTPSVTEV PEKEDENMDQ RPKPEISQDY DTDDEEKSNN GKFSNYYNL

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.