Factsheet for Solyc09g074520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029517	Potato	cytosol	97.93	97.93
Solyc06g008440.1.1	Tomato	extracellular	9.29	84.38
KRH68108	Soybean	cytosol	79.52	78.84
KRG96377	Soybean	cytosol	79.35	78.53
CDY68868	Canola	cytosol	71.94	77.41
Solyc06g008470.1.1	Tomato	extracellular	7.57	77.19
KRH71533	Soybean	cytosol	77.45	76.92
CDY53998	Canola	cytosol	77.11	76.71
CDY11468	Canola	cytosol	78.31	76.47
KRH31921	Soybean	cytosol	76.94	76.41
AT3G62980.1	Thale cress	cytosol	77.97	76.26
Bra007720.1-P	Field mustard	cytosol	77.97	76.13
CDX76680	Canola	cytosol	77.62	75.8
Bra003518.1-P	Field mustard	cytosol	77.28	75.59
Solyc06g008810.2.1	Tomato	cytosol	54.04	74.58
Solyc06g008460.1.1	Tomato	extracellular	29.78	73.0
CDX67912	Canola	endoplasmic reticulum, golgi	77.45	69.77
GSMUA_Achr5P26930_001	Banana	cytosol	53.87	67.46
CDX89163	Canola	cytosol	70.91	65.81
Bra014378.1-P	Field mustard	cytosol	70.91	65.81
GSMUA_Achr3P23850_001	Banana	cytosol	65.4	65.29
Solyc06g008780.1.1	Tomato	extracellular	53.36	62.5
Os05t0150500-00	Rice	plastid	62.48	61.84
KXG21312	Sorghum	plastid	62.13	61.08
Zm00001d010863_P001	Maize	plastid	61.96	61.02
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	61.27	60.44
TraesCS1A01G091300.1	Wheat	cytosol	61.45	60.3
TraesCS1D01G099900.1	Wheat	cytosol	61.27	59.33
Solyc05g009260.1.1	Tomato	extracellular	7.92	56.79
Solyc06g007840.2.1	Tomato	extracellular, plastid	7.92	56.1
HORVU1Hr1G021550.4	Barley	cytosol	60.24	54.52
Solyc02g079190.2.1	Tomato	cytosol	53.87	53.32
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	9.64	49.12
Solyc04g074980.2.1	Tomato	cytosol	48.54	45.26
Solyc06g084490.1.1	Tomato	plastid	14.63	40.48
Solyc05g052620.2.1	Tomato	cytosol	31.33	30.18

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:C8C507	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:GQ370812	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc09g074520.2	EnsemblPlants:Solyc09g074520.2.1
UniParc:UPI0001B601B5	:	:	:	:	:

Description

TIR1-like protein [Source:UniProtKB/TrEMBL;Acc:C8C507]

Coordinates

chr9:+:66330353..66334159

Molecular Weight (calculated)

65508.2 Da

IEP (calculated)

7.055

GRAVY (calculated)

-0.034

Length

581 amino acids

Sequence
(BLAST)

001: MAYSFPEEVL EHVFSFLTTD KDRNAVSVVC KSWYEIERWC RRRIFVGNCY AVSPRIMIRR FPEVRSVELK GKPHFADFNL VPEGWGAYVY PWILAMSRSY
101: PWLEEIKLKR MVITDESLEL ISKSFKNFKV LVLSSCDGFT TDGLAAIAAN CRNLRKLDLG ESEVEDLSGH WLSHFPDNCT SLVSLNIACL ASEVSLLALE
201: RLVTRSPNLT TLKINRAVPL ERLPNLLRRT SQLVKFGTGV FSADVRSDFF SNLTEAFSSC KQLKCLSGFW DVVPAYLPAL YPVCSRLTSL NLSYATCQNP
301: DLGKLISQCH NLRRLWVLDY IEDTGLEELA ANCKDLQELR VFPSDPFAAE PNTTLTEQGL VAVSDGCPKL QSVLYFCRQM TNAALVTIAR NRPNMIRFRL
401: CIIEPRTPDY LTLGSFDAGF GAIVENCKEL RRLSLSGLLT DRVFEYIGAH AKKLEMLSIA FAGDSDLGLH HVLSGCDSLR KLEIRDCPFG DKALLANAAK
501: LETMRSLWMS SCSVSFEACK MLAQKMPRLN VEVIDERGPP DTRPESCPVE KLYIYRTVAG RRFDTPGYVW TMDEDAAVSL T

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.