Factsheet for Solyc09g083280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g037530.2.1
Solyc03g031970.2.1
Solyc03g059310.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g009260.1.1
Solyc06g007830.1.1
Solyc06g007840.2.1
Solyc06g008440.1.1
Solyc06g008460.1.1
Solyc06g008470.1.1
Solyc06g008780.1.1
Solyc06g008810.2.1
Solyc06g053840.2.1
Solyc06g084490.1.1
Solyc07g042260.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g074520.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14560.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT4G14560.1	Solyc09g083290.2.1	AT1G04250.1	9342315
AT4G14560.1	Solyc07g042260.2.1	AT1G19220.1	9342315
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	14729917
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	9342315
AT4G14560.1	Solyc03g121060.2.1	AT1G51950.1	21798944
AT4G14560.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT4G14560.1	Solyc03g120380.2.1	AT3G15540.1	9342315
AT4G14560.1	Solyc03g059310.2.1	AT3G18140.1	21798944
AT4G14560.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT4G14560.1	Solyc05g009260.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g007830.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g007840.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008440.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008460.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008470.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008780.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008810.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g084490.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc09g074520.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	14729917
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	14729917
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	14729917
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	21798944
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	21798944
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	21798944
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT4G14560.1	Solyc08g008380.2.1	AT4G23980.1	21734647
AT4G14560.1	Solyc08g082630.2.1	AT4G23980.1	21734647
AT4G14560.1	Solyc07g042260.2.1	AT5G20730.1	14729917
AT4G14560.1	Solyc07g042260.2.1	AT5G20730.1	9342315
AT4G14560.1	Solyc02g037530.2.1	AT5G37020.1	14729917
AT4G14560.1	Solyc03g031970.2.1	AT5G37020.1	14729917
AT4G14560.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT4G14560.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT4G14560.1	Solyc09g083280.2.1	AT5G43700.1	21734647
AT4G14560.1	Solyc04g054280.1.1	AT5G43700.1	9342315
AT4G14560.1	Solyc06g053840.2.1	AT5G43700.1	9342315
AT4G14560.1	Solyc09g083280.2.1	AT5G43700.1	9342315
AT5G43700.1	Solyc07g042260.2.1	AT1G19220.1	21734647
AT5G43700.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT5G43700.1	Solyc03g121060.2.1	AT1G51950.1	21734647
AT5G43700.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT5G43700.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT5G43700.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT5G43700.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT5G43700.1	Solyc07g042260.2.1	AT5G20730.1	21734647
AT5G43700.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT5G43700.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT5G43700.1	Solyc09g083280.2.1	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015655	Potato	nucleus	98.98	99.49
Solyc06g053840.2.1	Tomato	nucleus	78.06	80.53
KRH34375	Soybean	cytosol, nucleus	49.49	79.51
AT4G14560.1	Thale cress	nucleus	59.18	69.05
CDY32934	Canola	cytosol, nucleus, plastid	66.84	68.59
Bra027504.1-P	Field mustard	nucleus	66.33	68.06
CDY69497	Canola	cytosol, nucleus, plastid	65.82	67.54
AT5G43700.1	Thale cress	cytosol, extracellular, nucleus	63.78	67.2
KRH69048	Soybean	nucleus	65.31	66.67
CDX94876	Canola	nucleus	58.16	66.67
CDY36883	Canola	nucleus	58.16	66.28
Solyc04g054280.1.1	Tomato	nucleus	56.12	66.27
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	62.76	66.13
CDX89833	Canola	cytosol, nucleus, plastid	62.76	66.13
CDY32536	Canola	cytosol, nucleus, plastid	60.71	66.11
CDX92972	Canola	nucleus	57.65	66.08
Bra001899.1-P	Field mustard	nucleus	57.65	66.08
VIT_05s0020g04680.t01	Wine grape	nucleus	56.63	66.07
CDY10069	Canola	nucleus	61.73	65.76
CDY40837	Canola	nucleus	57.14	65.5
CDY10692	Canola	nucleus	57.14	65.12
Bra032521.1-P	Field mustard	nucleus	59.69	65.0
CDY35493	Canola	nucleus	56.63	64.91
Bra023771.1-P	Field mustard	nucleus	56.63	64.91
CDY53735	Canola	nucleus	56.63	64.53
Bra033890.1-P	Field mustard	nucleus	56.63	64.53
CDY10346	Canola	nucleus	56.63	64.53
CDY18213	Canola	cytosol, nucleus, plastid	61.22	64.52
Solyc09g065850.2.1	Tomato	nucleus	60.71	64.32
Solyc06g084070.2.1	Tomato	nucleus, plastid	50.51	63.46
KRG92430	Soybean	nucleus	62.76	63.4
Bra039732.1-P	Field mustard	nucleus	55.1	63.16
GSMUA_Achr5P03110_001	Banana	nucleus	53.57	62.5
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	42.86	61.76
GSMUA_Achr4P22530_001	Banana	nucleus	54.08	58.56
GSMUA_Achr4P05200_001	Banana	mitochondrion	37.24	58.4
Solyc06g008580.2.1	Tomato	nucleus	55.1	56.84
GSMUA_Achr4P21030_001	Banana	nucleus	56.63	56.06
GSMUA_Achr9P24330_001	Banana	nucleus	48.47	55.56
GSMUA_Achr11P...	Banana	nucleus	47.96	54.02
GSMUA_Achr8P20620_001	Banana	nucleus	50.51	52.66
GSMUA_Achr2P12630_001	Banana	nucleus	53.57	51.72
EER98076	Sorghum	cytosol, mitochondrion, nucleus	50.51	49.75
TraesCS5B01G058800.1	Wheat	cytosol	54.08	49.53
TraesCS5D01G069200.1	Wheat	cytosol	54.08	49.53
TraesCS5A01G058700.1	Wheat	cytosol	54.08	49.53
Os12t0601400-01	Rice	nucleus	49.49	49.24
Zm00001d013071_P001	Maize	nucleus	44.39	48.07
Zm00001d018973_P001	Maize	nucleus	48.98	47.52
TraesCS5D01G449400.1	Wheat	nucleus	43.88	47.51
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	42.86	47.46
EER90734	Sorghum	cytosol, nucleus, plastid	43.88	46.24
Solyc06g008590.2.1	Tomato	nucleus	48.98	46.15
Zm00001d041418_P001	Maize	nucleus	52.04	44.35
TraesCS5D01G388200.1	Wheat	nucleus	48.47	44.19
EER93778	Sorghum	cytosol, nucleus, plastid	50.51	43.81
Solyc06g053830.2.1	Tomato	nucleus	48.47	43.58
TraesCS5A01G378200.1	Wheat	nucleus	46.94	43.4
Os03t0633800-01	Rice	nucleus	50.0	43.36
Zm00001d013707_P001	Maize	nucleus	49.49	43.3
Solyc03g120380.2.1	Tomato	nucleus	42.35	43.23
AT3G23030.2	Thale cress	vacuole	57.14	42.91
AT1G04240.2	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	63.27	42.91
Solyc09g083290.2.1	Tomato	nucleus	51.53	42.8
Os03t0797800-01	Rice	nucleus	42.86	42.64
Zm00001d033319_P001	Maize	nucleus	48.98	42.48
TraesCS5B01G381800.1	Wheat	nucleus	45.92	42.45
EES16315	Sorghum	cytosol	52.55	42.21
Os07t0182400-01	Rice	plastid	46.43	41.55
Solyc01g097290.2.1	Tomato	nucleus	52.04	40.64
Zm00001d030993_P001	Maize	nucleus	39.8	39.2
HORVU5Hr1G106350.2	Barley	plastid	43.37	37.78
Solyc12g007230.1.1	Tomato	nucleus	54.08	35.93
Solyc03g120390.2.1	Tomato	nucleus, plastid	45.41	35.32
Solyc03g120500.2.1	Tomato	nucleus	49.49	34.89
HORVU5Hr1G014290.1	Barley	mitochondrion	44.9	34.38
HORVU5Hr1G093640.1	Barley	mitochondrion	50.0	31.21
Solyc04g076850.2.1	Tomato	nucleus	50.0	28.08
Zm00001d034463_P001	Maize	extracellular, golgi	42.86	26.25

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPV2	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379431	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF11
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc09g083280.2	EnsemblPlants:Solyc09g083280.2.1	UniParc:UPI000243DBF4	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPV2]

Coordinates

chr9:-:68933071..68934856

Molecular Weight (calculated)

22022.2 Da

IEP (calculated)

5.903

GRAVY (calculated)

-0.766

Length

196 amino acids

Sequence
(BLAST)

001: MTSIVGNQKD LNFKATELRL GLPGTEDQES DQEISNSKNN NKRALPESTH DEEDCESKSS SDHVKTPPPV AKAQIVGWPP VRSNRKNIIQ PKKTESESGM
101: YVKVSMDGAP YLRKIDLKMY KCYQELLKAL ENMFKLTIGE YSEREGYKGS EFAPAYEDKD GDLMLVGDVP WEMFMSSCKR LRIMKGSEAR GLGCGV

Best Arabidopsis Sequence Match ( AT1G04240.2 )
(BLAST)

001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV

Arabidopsis Description

SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.