Factsheet for VIT_05s0020g04680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01740.t01
VIT_04s0079g00200.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_06s0004g04740.t01
VIT_07s0005g02550.t01
VIT_07s0104g01320.t01
VIT_09s0002g03410.t01
VIT_09s0002g05150.t01
VIT_11s0016g00640.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14560.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT4G14560.1	VIT_05s0020g04690.t01	AT1G04250.1	9342315
AT4G14560.1	VIT_11s0016g00640.t01	AT1G19220.1	9342315
AT4G14560.1	VIT_18s0001g13930.t01	AT1G19850.1	14729917
AT4G14560.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT4G14560.1	VIT_18s0001g13930.t01	AT1G19850.1	9342315
AT4G14560.1	VIT_09s0002g03410.t01	AT1G51950.1	21798944
AT4G14560.1	VIT_07s0005g02550.t01	AT2G46990.1	9342315
AT4G14560.1	VIT_09s0002g05150.t01	AT3G15540.1	21734647
AT4G14560.1	VIT_09s0002g05150.t01	AT3G15540.1	9342315
AT4G14560.1	VIT_06s0004g04740.t01	AT3G18140.1	21798944
AT4G14560.1	VIT_05s0020g04690.t01	AT3G23050.1	21734647
AT4G14560.1	VIT_07s0104g01320.t01	AT3G62980.1	15546359
AT4G14560.1	VIT_05s0020g04680.t01	AT4G14560.1	14729917
AT4G14560.1	VIT_05s0020g04680.t01	AT4G14560.1	21734647
AT4G14560.1	VIT_05s0020g04680.t01	AT4G14560.1	21798944
AT4G14560.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT4G14560.1	VIT_02s0025g01740.t01	AT4G23980.1	21734647
AT4G14560.1	VIT_11s0016g00640.t01	AT5G20730.1	14729917
AT4G14560.1	VIT_11s0016g00640.t01	AT5G20730.1	9342315
AT4G14560.1	VIT_04s0079g00200.t01	AT5G37020.1	14729917
AT4G14560.1	VIT_05s0020g04680.t01	AT5G43700.1	21734647
AT4G14560.1	VIT_05s0020g04680.t01	AT5G43700.1	9342315
AT5G43700.1	VIT_11s0016g00640.t01	AT1G19220.1	21734647
AT5G43700.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT5G43700.1	VIT_09s0002g03410.t01	AT1G51950.1	21734647
AT5G43700.1	VIT_07s0005g02550.t01	AT2G46990.1	21734647
AT5G43700.1	VIT_09s0002g05150.t01	AT3G15540.1	21734647
AT5G43700.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT5G43700.1	VIT_11s0016g00640.t01	AT5G20730.1	21734647
AT5G43700.1	VIT_05s0020g04680.t01	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00270.t01	Wine grape	nucleus	71.43	64.52
KRH34375	Soybean	cytosol, nucleus	45.83	63.11
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	48.81	60.29
PGSC0003DMT400034978	Potato	cytosol, mitochondrion, nucleus	58.33	59.76
AT4G14560.1	Thale cress	nucleus	58.93	58.93
VIT_14s0030g02310.t01	Wine grape	nucleus	69.64	58.79
CDY40837	Canola	nucleus	59.52	58.48
Bra001899.1-P	Field mustard	nucleus	59.52	58.48
CDX94876	Canola	nucleus	59.52	58.48
CDX92972	Canola	nucleus	59.52	58.48
KRG92430	Soybean	nucleus	67.26	58.25
PGSC0003DMT400042074	Potato	cytosol, nucleus, plastid	65.48	57.89
CDY35493	Canola	nucleus	58.93	57.89
Bra023771.1-P	Field mustard	nucleus	58.93	57.89
KRH69048	Soybean	nucleus	66.07	57.81
Bra033890.1-P	Field mustard	nucleus	58.93	57.56
CDY10692	Canola	nucleus	58.93	57.56
CDY36883	Canola	nucleus	58.93	57.56
Solyc06g053840.2.1	Tomato	nucleus	64.88	57.37
CDY10346	Canola	nucleus	58.33	56.98
Solyc09g083280.2.1	Tomato	nucleus	66.07	56.63
PGSC0003DMT400015655	Potato	nucleus	65.48	56.41
CDY53735	Canola	nucleus	57.74	56.4
AT5G43700.1	Thale cress	cytosol, extracellular, nucleus	61.9	55.91
Bra039732.1-P	Field mustard	nucleus	56.55	55.56
CDY32934	Canola	cytosol, nucleus, plastid	63.1	55.5
CDY69497	Canola	cytosol, nucleus, plastid	62.5	54.97
Bra027504.1-P	Field mustard	nucleus	61.9	54.45
CDY32536	Canola	cytosol, nucleus, plastid	56.55	52.78
Bra032521.1-P	Field mustard	nucleus	55.95	52.22
CDY10069	Canola	nucleus	57.14	52.17
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	57.74	52.15
CDX89833	Canola	cytosol, nucleus, plastid	57.74	52.15
GSMUA_Achr5P03110_001	Banana	nucleus	51.79	51.79
CDY18213	Canola	cytosol, nucleus, plastid	57.14	51.61
GSMUA_Achr8P20620_001	Banana	nucleus	57.14	51.06
GSMUA_Achr4P22530_001	Banana	nucleus	53.57	49.72
Solyc04g054280.1.1	Tomato	nucleus	47.62	48.19
GSMUA_Achr9P24330_001	Banana	nucleus	48.81	47.95
GSMUA_Achr4P21030_001	Banana	nucleus	55.95	47.47
GSMUA_Achr2P12630_001	Banana	nucleus	57.14	47.29
GSMUA_Achr4P05200_001	Banana	mitochondrion	34.52	46.4
GSMUA_Achr11P...	Banana	nucleus	45.24	43.68
Zm00001d030993_P001	Maize	nucleus	51.19	43.22
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	42.86	42.35
Os12t0601400-01	Rice	nucleus	48.81	41.62
TraesCS5B01G058800.1	Wheat	cytosol	51.79	40.65
TraesCS5A01G058700.1	Wheat	cytosol	51.79	40.65
TraesCS5D01G069200.1	Wheat	cytosol	51.79	40.65
EER98076	Sorghum	cytosol, mitochondrion, nucleus	47.62	40.2
TraesCS5D01G449400.1	Wheat	nucleus	42.86	39.78
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	41.67	39.55
EER90734	Sorghum	cytosol, nucleus, plastid	43.45	39.25
Zm00001d013071_P001	Maize	nucleus	42.26	39.23
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	44.64	39.06
Zm00001d018973_P001	Maize	nucleus	46.43	38.61
TraesCS5D01G388200.1	Wheat	nucleus	49.4	38.6
TraesCS5B01G381800.1	Wheat	nucleus	48.21	38.21
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	53.57	37.82
AT3G23030.2	Thale cress	vacuole	58.33	37.55
Zm00001d013707_P001	Maize	nucleus	50.0	37.5
Zm00001d041418_P001	Maize	nucleus	51.19	37.39
TraesCS5A01G378200.1	Wheat	nucleus	47.02	37.26
EER93778	Sorghum	cytosol, nucleus, plastid	50.0	37.17
Zm00001d033319_P001	Maize	nucleus	48.81	36.28
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	52.38	36.21
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	46.43	36.11
Os03t0633800-01	Rice	nucleus	47.62	35.4
EES16315	Sorghum	cytosol	51.19	35.25
HORVU5Hr1G014290.1	Barley	mitochondrion	53.57	35.16
Os03t0797800-01	Rice	nucleus	41.07	35.03
AT1G04240.2	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	58.93	34.26
Os07t0182400-01	Rice	plastid	44.64	34.25
HORVU5Hr1G106350.2	Barley	plastid	42.26	31.56
VIT_11s0016g03540.t01	Wine grape	nucleus	58.33	30.62
VIT_09s0002g04080.t01	Wine grape	nucleus	55.95	29.38
HORVU5Hr1G093640.1	Barley	mitochondrion	50.6	27.07
VIT_09s0002g05160.t01	Wine grape	nucleus	41.07	23.47
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	55.95	22.93
Zm00001d034463_P001	Maize	extracellular, golgi	42.86	22.5

Protein Annotations

EntrezGene:100259648	wikigene:100259648	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CCB50495	ProteinID:CCB50495.1	UniProt:F6HDY0	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100259648
wikigene:LOC100259648	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF11
SUPFAM:SSF54277	TIGR:TC63748	UniParc:UPI00021081C1	ArrayExpress:VIT_05s0020g04680	EnsemblPlantsGene:VIT_05s0020g04680	EnsemblPlants:VIT_05s0020g04680.t01
unigene:Vvi.9164	RefSeq:XP_002284121	RefSeq:XP_002284121.1	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6HDY0]

Coordinates

chr5:-:6536583..6537443

Molecular Weight (calculated)

18683.9 Da

IEP (calculated)

4.808

GRAVY (calculated)

-0.789

Length

168 amino acids

Sequence
(BLAST)

001: MEGAVAYESD LNLKATELRL GLPGRDEAEK EALSGVRNNK RASPDTSDEC GSKGSSNGDR ENAPATKAQV VGWPPIRSFR KNSFQPKKTE AEAAGMFVKV
101: SMDGAPYLRK IDLKVYKGYP ELLQALQNMF KFTIGDYSER EGYKGSEYVP TYEDKDGDWM LVGDVPWE

Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)

001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL

Arabidopsis Description

IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.