Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G351400.1 | Wheat | cytosol, nucleus, plastid | 44.91 | 53.89 |
| Os01t0178500-02 | Rice | nucleus | 49.54 | 53.77 |
| TraesCS7A01G371500.1 | Wheat | cytosol, nucleus, plastid | 44.91 | 53.59 |
| TraesCS7B01G256100.1 | Wheat | cytosol, nucleus, plastid | 43.98 | 52.49 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 41.2 | 52.35 |
| GSMUA_Achr9P02960_001 | Banana | nucleus | 50.0 | 52.17 |
| TraesCS1B01G138100.1 | Wheat | cytosol | 47.69 | 52.02 |
| TraesCS1D01G119500.1 | Wheat | nucleus | 47.69 | 52.02 |
| KXG20284 | Sorghum | plastid | 43.98 | 51.08 |
| HORVU1Hr1G025670.3 | Barley | nucleus | 47.22 | 51.0 |
| TraesCS3A01G121300.2 | Wheat | nucleus | 47.22 | 50.49 |
| TraesCS3B01G140700.1 | Wheat | cytosol | 44.91 | 50.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.46 | 49.77 |
| EES19135 | Sorghum | nucleus, plastid | 45.83 | 49.01 |
| TraesCS3D01G123400.1 | Wheat | nucleus | 39.81 | 48.86 |
| Zm00001d039624_P001 | Maize | nucleus | 49.54 | 48.64 |
| KXG31707 | Sorghum | nucleus | 49.54 | 48.64 |
| Os05t0178600-01 | Rice | nucleus | 46.76 | 47.64 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 40.74 | 47.31 |
| Zm00001d036918_P001 | Maize | nucleus | 42.59 | 46.46 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 36.11 | 46.43 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 41.67 | 45.23 |
| Zm00001d008749_P002 | Maize | cytosol | 45.83 | 45.21 |
| HORVU7Hr1G084940.3 | Barley | plastid | 38.89 | 44.68 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 48.15 | 43.7 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 48.15 | 42.8 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 37.96 | 42.71 |
| TraesCS1A01G118400.2 | Wheat | cytosol | 39.81 | 42.36 |
| HORVU3Hr1G022540.7 | Barley | cytosol, nucleus | 40.74 | 40.74 |
| VIT_09s0002g05160.t01 | Wine grape | nucleus | 54.63 | 40.14 |
| GSMUA_Achr4P08960_001 | Banana | nucleus | 49.54 | 39.34 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 48.61 | 32.81 |
| GSMUA_Achr7P13250_001 | Banana | nucleus | 44.44 | 32.32 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 47.22 | 31.88 |
| VIT_18s0001g08090.t01 | Wine grape | cytosol, nucleus, vacuole | 46.76 | 24.63 |
Protein Annotations
| EntrezGene:100247336 | wikigene:100247336 | Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| ProteinID:CBI28126 | ProteinID:CBI28126.3 | UniProt:D7TBU1 | EMBL:FN595756 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | EntrezGene:LOC100247336 |
| wikigene:LOC100247336 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF34 |
| SUPFAM:SSF54277 | TIGR:TC59942 | TIGR:TC66794 | UniParc:UPI0001BE320F | ArrayExpress:VIT_11s0016g04490 | EnsemblPlantsGene:VIT_11s0016g04490 |
| EnsemblPlants:VIT_11s0016g04490.t01 | unigene:Vvi.10336 | unigene:Vvi.9611 | RefSeq:XP_002284861 | RefSeq:XP_002284861.1 | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7TBU1]
Coordinates
chr11:+:3794479..3798406
Molecular Weight (calculated)
23576.1 Da
IEP (calculated)
7.021
GRAVY (calculated)
-0.415
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSNTADQSP DSGTTGMSLK DTELTLGLPG EAQVVIVGGK SCSKRGYSDT VDFRFRCCSG ESSAKAEKVD WPGKEISGPG KAPDSKAQVV GWPPVRSVRK
101: KALKSCKYVK VAVDGAPYLR KVDLEVHRSY QQLLMALETM FDCFTISSND LEESKIMNPV NGAEYVPTYE DKDGDWMLVG DVPWNMFVES CKRVRLMKSS
201: EAIGLAPRTP SCTSTT
101: KALKSCKYVK VAVDGAPYLR KVDLEVHRSY QQLLMALETM FDCFTISSND LEESKIMNPV NGAEYVPTYE DKDGDWMLVG DVPWNMFVES CKRVRLMKSS
201: EAIGLAPRTP SCTSTT
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.