Factsheet for HORVU1Hr1G025670.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G138100.1	Wheat	cytosol	97.5	98.48
TraesCS1D01G119500.1	Wheat	nucleus	97.0	97.98
TraesCS1A01G118400.2	Wheat	cytosol	84.5	83.25
Os05t0178600-01	Rice	nucleus	77.0	72.64
EES19135	Sorghum	nucleus, plastid	72.5	71.78
HORVU3Hr1G022540.7	Barley	cytosol, nucleus	60.5	56.02
GSMUA_Achr9P02960_001	Banana	nucleus	56.5	54.59
KRH23505	Soybean	nucleus	48.5	53.01
GSMUA_AchrUn_...	Banana	nucleus	57.5	52.51
KRH09810	Soybean	nucleus	49.0	51.85
HORVU7Hr1G084940.3	Barley	plastid	47.0	50.0
PGSC0003DMT400006798	Potato	nucleus	51.5	48.58
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	51.0	47.22
Solyc03g120390.2.1	Tomato	nucleus, plastid	52.0	41.27
GSMUA_Achr4P08960_001	Banana	nucleus	54.0	39.71
HORVU5Hr1G094220.1	Barley	nucleus	44.5	37.55
HORVU3Hr1G031460.1	Barley	cytosol	41.0	35.65
HORVU5Hr1G014300.4	Barley	nucleus	49.0	35.51
VIT_09s0002g05160.t01	Wine grape	nucleus	51.0	34.69
GSMUA_Achr7P13250_001	Banana	nucleus	49.0	33.0
HORVU5Hr1G093580.2	Barley	cytosol, nucleus, peroxisome	44.5	31.67
HORVU0Hr1G021630.1	Barley	cytosol, mitochondrion, nucleus	27.5	29.89
HORVU3Hr1G062160.2	Barley	nucleus, plastid	38.5	29.62
HORVU5Hr1G106350.2	Barley	plastid	33.0	29.33
HORVU3Hr1G088810.1	Barley	plastid	32.0	27.0
HORVU1Hr1G086070.6	Barley	plastid	38.0	24.28
HORVU5Hr1G014290.1	Barley	mitochondrion	30.5	23.83
HORVU5Hr1G093640.1	Barley	mitochondrion	35.5	22.61

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A287EYY0	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:HORVU1Hr1G025670
EnsemblPlants:HORVU1Hr1G025670.3	InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734
PANTHER:PTHR31734:SF86	SUPFAM:SSF54277	UniParc:UPI000B45FCAC	SEG:seg	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287EYY0]

Coordinates

chrchr1H:+:126419173..126422160

Molecular Weight (calculated)

21739.6 Da

IEP (calculated)

7.187

GRAVY (calculated)

-0.425

Length

200 amino acids

Sequence
(BLAST)

001: MSVETERSST ESSAASGLDF EDTALTLRLP GSDPDRKRAS TSDPDCPSPT AAASDSPPSP KAQVVGWPPV RSFRKNALAS AASSKTKFVK VAVDGAPYLR
101: KVDLKAYAGY TSPASYDQLL ATLQDKFISH LTVRKLGNEE MKLVDALSGT EYVPTYEDKD GDWMLVGDVP WSCRMFVETC QRIRLMKSSE VVNLAPRAGR

Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)

001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA

Arabidopsis Description

IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.