Factsheet for Os05t0178600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G119500.1	Wheat	nucleus	73.58	78.79
TraesCS1B01G138100.1	Wheat	cytosol	73.58	78.79
HORVU1Hr1G025670.3	Barley	nucleus	72.64	77.0
Os01t0178500-02	Rice	nucleus	71.23	75.88
TraesCS1A01G118400.2	Wheat	cytosol	66.51	69.46
EES19135	Sorghum	nucleus, plastid	63.68	66.83
GSMUA_Achr9P02960_001	Banana	nucleus	51.42	52.66
KRH23505	Soybean	nucleus	44.34	51.37
GSMUA_AchrUn_...	Banana	nucleus	51.89	50.23
KRH09810	Soybean	nucleus	43.87	49.21
PGSC0003DMT400006798	Potato	nucleus	47.17	47.17
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	47.64	46.76
Solyc03g120390.2.1	Tomato	nucleus, plastid	48.11	40.48
GSMUA_Achr4P08960_001	Banana	nucleus	51.89	40.44
Os03t0633500-01	Rice	cytosol	42.45	38.63
Os03t0742900-01	Rice	vacuole	40.09	36.02
VIT_09s0002g05160.t01	Wine grape	nucleus	48.58	35.03
Os12t0601400-01	Rice	nucleus	32.55	35.03
Os12t0601300-01	Rice	nucleus	45.75	35.02
GSMUA_Achr7P13250_001	Banana	nucleus	48.58	34.68
Os03t0797800-01	Rice	nucleus	30.19	32.49
Os05t0230700-01	Rice	nucleus	38.68	31.91
Os03t0633800-01	Rice	nucleus	33.96	31.86
Os07t0182400-01	Rice	plastid	32.08	31.05
Os01t0675700-01	Rice	nucleus	38.68	30.26
Os06t0335500-01	Rice	nucleus	37.26	29.7
Os01t0231000-01	Rice	nucleus	36.79	29.66
Os05t0559400-01	Rice	nucleus	36.79	27.76

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:4337971	ProteinID:AAT77358.1	EMBL:AK061796	EMBL:AK100080
InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ProteinID:BAF16714.1	ProteinID:BAS92538.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009733	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EnsemblPlantsGene:Os05g0178600	EnsemblPlants:Os05t0178600-01	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734
PANTHER:PTHR31734:SF86	UniProt:Q6AT10	SUPFAM:SSF54277	UniParc:UPI00003FE71A	RefSeq:XP_015640747.1	SEG:seg

Description

IAA15Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os05t0178600-01)

Coordinates

chr5:-:4681468..4684497

Molecular Weight (calculated)

22882.6 Da

IEP (calculated)

5.420

GRAVY (calculated)

-0.494

Length

212 amino acids

Sequence
(BLAST)

001: MSVETERSST ESSAASGLDF EDTALTLRLP GSSSSSSSSS SSSSSSSPSE PDRKRASATD DDPDNRLGST ATESPPSPKA RVVGWPPVRA FRKNALAALA
101: AASSSKAKFV KVAVDGAPYL RKVDLEAYRG YDQLLAALQD KFFSHFTIRK LGNEEMKLVD AVSGNEYVPT YEDKDGDWML VGDVPWKMFV ETCQRLRLMK
201: SSEAVNLAPR SA

Best Arabidopsis Sequence Match ( AT1G04240.2 )
(BLAST)

001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV

Arabidopsis Description

SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.