Factsheet for Os01t0178500-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0178600-01	Rice	nucleus	75.88	71.23
GSMUA_Achr9P02960_001	Banana	nucleus	58.29	56.04
KRH23505	Soybean	nucleus	49.75	54.1
GSMUA_AchrUn_...	Banana	nucleus	59.3	53.88
KRH09810	Soybean	nucleus	49.75	52.38
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	53.77	49.54
PGSC0003DMT400006798	Potato	nucleus	52.26	49.06
GSMUA_Achr4P08960_001	Banana	nucleus	58.29	42.65
Solyc03g120390.2.1	Tomato	nucleus, plastid	52.76	41.67
Os03t0633500-01	Rice	cytosol	47.24	40.34
Os12t0601400-01	Rice	nucleus	38.69	39.09
Os03t0742900-01	Rice	vacuole	45.73	38.56
GSMUA_Achr7P13250_001	Banana	nucleus	54.27	36.36
Os12t0601300-01	Rice	nucleus	50.25	36.1
VIT_09s0002g05160.t01	Wine grape	nucleus	53.27	36.05
Os03t0797800-01	Rice	nucleus	33.67	34.01
Os06t0335500-01	Rice	nucleus	45.23	33.83
Os03t0633800-01	Rice	nucleus	37.69	33.19
Os05t0230700-01	Rice	nucleus	42.71	33.07
Os01t0675700-01	Rice	nucleus	44.22	32.47
Os01t0231000-01	Rice	nucleus	40.7	30.8
Os07t0182400-01	Rice	plastid	33.67	30.59
Os05t0559400-01	Rice	nucleus	41.21	29.18

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:4323871	EMBL:AK060091	EMBL:AK069242	EMBL:AK100800
EMBL:AK109373	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ProteinID:BAD67830.1	ProteinID:BAD67992.1	ProteinID:BAF04106.1
ProteinID:BAS70703.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009733
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EnsemblPlantsGene:Os01g0178500	EnsemblPlants:Os01t0178500-02	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF86	UniProt:Q5VRD1	SUPFAM:SSF54277
UniParc:UPI0000457CC5	RefSeq:XP_015622507.1	SEG:seg	:	:	:

Description

IAA1Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os01t0178500-02)

Coordinates

chr1:-:4073916..4076438

Molecular Weight (calculated)

21585.3 Da

IEP (calculated)

5.106

GRAVY (calculated)

-0.381

Length

199 amino acids

Sequence
(BLAST)

001: MSVETERSST ESSAASGLDF EDTALTLRLP GSLAAAAAPD PDRKRSSPSS SDAADAADNS SPLAAAADAP PAPKARVVGW PPVRSFRKNA LAAKFVKVAV
101: DGAPYLRKVD LEAYSGYDQL LRALQDKFFS HFTIRKFADD ERKLVDAVNG TEYVPTYEDK DGDWMLVGDV PWKMFVETCQ RLRLMKSSEA VNLAPRAAQ

Best Arabidopsis Sequence Match ( AT1G04240.1 )
(BLAST)

001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV

Arabidopsis Description

SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.