Factsheet for GSMUA_Achr7P13250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0178500-02	Rice	nucleus	36.36	54.27
GSMUA_Achr9P02960_001	Banana	nucleus	37.71	54.11
TraesCS7A01G371500.1	Wheat	cytosol, nucleus, plastid	32.32	53.04
TraesCS7D01G351400.1	Wheat	cytosol, nucleus, plastid	31.99	52.78
TraesCS7B01G256100.1	Wheat	cytosol, nucleus, plastid	31.99	52.49
TraesCS3D01G123400.1	Wheat	nucleus	30.98	52.27
TraesCS3A01G121300.2	Wheat	nucleus	35.35	51.98
TraesCS3B01G140700.1	Wheat	cytosol	33.67	51.81
GSMUA_AchrUn_...	Banana	nucleus	38.05	51.6
TraesCS1B01G138100.1	Wheat	cytosol	33.33	50.0
TraesCS1D01G119500.1	Wheat	nucleus	33.33	50.0
KXG20284	Sorghum	plastid	30.98	49.46
EES19135	Sorghum	nucleus, plastid	33.33	49.01
HORVU1Hr1G025670.3	Barley	nucleus	33.0	49.0
GSMUA_Achr4P05200_001	Banana	mitochondrion	20.54	48.8
Os05t0178600-01	Rice	nucleus	34.68	48.58
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	22.22	48.53
Zm00001d039624_P001	Maize	nucleus	35.69	48.18
Zm00001d008749_P002	Maize	cytosol	35.35	47.95
KXG31707	Sorghum	nucleus	35.35	47.73
HORVU7Hr1G084940.3	Barley	plastid	29.29	46.28
Zm00001d036918_P001	Maize	nucleus	30.64	45.96
KRH23505	Soybean	nucleus	28.28	45.9
PGSC0003DMT400006798	Potato	nucleus	31.99	44.81
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	32.32	44.44
KRH09810	Soybean	nucleus	27.61	43.39
GSMUA_Achr9P24330_001	Banana	nucleus	24.58	42.69
HORVU3Hr1G022540.7	Barley	cytosol, nucleus	30.98	42.59
GSMUA_Achr4P22530_001	Banana	nucleus	25.93	42.54
GSMUA_Achr5P03110_001	Banana	nucleus	23.91	42.26
GSMUA_Achr4P08960_001	Banana	nucleus	37.71	41.18
TraesCS1A01G118400.2	Wheat	cytosol	27.95	40.89
GSMUA_Achr8P20620_001	Banana	nucleus	25.59	40.43
GSMUA_Achr4P21030_001	Banana	nucleus	26.6	39.9
GSMUA_Achr10P...	Banana	nucleus	32.32	39.83
GSMUA_Achr8P20610_001	Banana	nucleus	32.66	39.75
GSMUA_Achr11P...	Banana	nucleus	22.9	39.08
GSMUA_Achr4P21020_001	Banana	nucleus	32.32	38.71
GSMUA_Achr9P25550_001	Banana	nucleus	31.65	38.68
Solyc03g120390.2.1	Tomato	nucleus, plastid	32.66	38.49
GSMUA_Achr9P10700_001	Banana	nucleus	30.3	37.34
GSMUA_Achr4P22520_001	Banana	nucleus	31.65	37.15
GSMUA_Achr2P15340_001	Banana	nucleus	29.29	35.51
GSMUA_Achr2P12630_001	Banana	nucleus	24.24	35.47
VIT_09s0002g05160.t01	Wine grape	nucleus	32.66	32.99
GSMUA_Achr10P...	Banana	nucleus	30.3	32.37
GSMUA_Achr7P10930_001	Banana	nucleus	28.96	32.21
GSMUA_Achr10P...	Banana	nucleus	30.64	31.16
GSMUA_Achr10P...	Banana	nucleus	28.96	30.94
GSMUA_Achr2P09210_001	Banana	nucleus	25.59	30.65
GSMUA_Achr9P06290_001	Banana	nucleus	27.95	30.29
GSMUA_Achr6P26730_001	Banana	nucleus	27.27	29.03
GSMUA_Achr3P03400_001	Banana	nucleus	29.63	28.21

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G13250_001	EnsemblPlants:GSMUA_Achr7P13250_001
EnsemblPlants:GSMUA_Achr7T13250_001	InterPro:IPR000270	UniProt:M0TH62	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF34	SUPFAM:SSF54277	UniParc:UPI0002950955	:	:

Description

Auxin-responsive protein IAA23 [Source:GMGC_GENE;Acc:GSMUA_Achr7G13250_001]

Coordinates

chr7:-:10643297..10646812

Molecular Weight (calculated)

32922.4 Da

IEP (calculated)

6.684

GRAVY (calculated)

-0.827

Length

297 amino acids

Sequence
(BLAST)

001: MEEKREMEGD EGNSAKSQVA GIGYEETKLK LAPPCSSASR AGTEHHDRKR RRDLSVESPE DPQNPRQRNG GTEGVREIEG DEESSAESQV SGSGYEETEL
101: KLAPPCSAAS RAGTEHHDRK RRRDLSVESL GSQASRHGKP PAAKAPVVGW PPVRSYWKNT LRSRTFVKVA VDGTPYLRKV DLETYGGYRE LLTAVQAMFS
201: SCFTIDNGNR LVDLVKGTEY LPTYEDKDGD WMLIGDVPWK MFVSSCKRLR LMKSSEAVNL VVSISSSLQA STNSPGDNDL NNWFPLFQGD KPKDKPL

Best Arabidopsis Sequence Match ( AT1G04240.1 )
(BLAST)

001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV

Arabidopsis Description

SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.