Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23505 | Soybean | nucleus | 39.46 | 63.39 |
| KRH09810 | Soybean | nucleus | 40.14 | 62.43 |
| PGSC0003DMT400006798 | Potato | nucleus | 42.86 | 59.43 |
| VIT_11s0016g04490.t01 | Wine grape | cytosol, nucleus, plastid | 40.14 | 54.63 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 30.95 | 53.53 |
| TraesCS7D01G351400.1 | Wheat | cytosol, nucleus, plastid | 32.65 | 53.33 |
| Os01t0178500-02 | Rice | nucleus | 36.05 | 53.27 |
| TraesCS7A01G371500.1 | Wheat | cytosol, nucleus, plastid | 32.65 | 53.04 |
| Solyc03g120390.2.1 | Tomato | nucleus, plastid | 45.24 | 52.78 |
| TraesCS1D01G119500.1 | Wheat | nucleus | 35.03 | 52.02 |
| TraesCS1B01G138100.1 | Wheat | cytosol | 35.03 | 52.02 |
| TraesCS7B01G256100.1 | Wheat | cytosol, nucleus, plastid | 31.97 | 51.93 |
| HORVU1Hr1G025670.3 | Barley | nucleus | 34.69 | 51.0 |
| GSMUA_Achr9P02960_001 | Banana | nucleus | 35.71 | 50.72 |
| EES19135 | Sorghum | nucleus, plastid | 34.01 | 49.51 |
| TraesCS3B01G140700.1 | Wheat | cytosol | 31.97 | 48.7 |
| Os05t0178600-01 | Rice | nucleus | 35.03 | 48.58 |
| TraesCS3A01G121300.2 | Wheat | nucleus | 33.33 | 48.51 |
| KXG20284 | Sorghum | plastid | 30.27 | 47.85 |
| TraesCS3D01G123400.1 | Wheat | nucleus | 28.57 | 47.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.37 | 47.49 |
| Zm00001d039624_P001 | Maize | nucleus | 35.37 | 47.27 |
| KXG31707 | Sorghum | nucleus | 35.37 | 47.27 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 37.07 | 45.8 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 37.76 | 45.68 |
| HORVU7Hr1G084940.3 | Barley | plastid | 28.57 | 44.68 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 28.23 | 44.62 |
| Zm00001d036918_P001 | Maize | nucleus | 29.93 | 44.44 |
| Zm00001d008749_P002 | Maize | cytosol | 32.65 | 43.84 |
| TraesCS1A01G118400.2 | Wheat | cytosol | 29.59 | 42.86 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 28.57 | 42.21 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 23.47 | 41.07 |
| HORVU3Hr1G022540.7 | Barley | cytosol, nucleus | 29.25 | 39.81 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 25.85 | 39.58 |
| GSMUA_Achr4P08960_001 | Banana | nucleus | 35.71 | 38.6 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 36.39 | 33.44 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 36.39 | 33.44 |
| GSMUA_Achr7P13250_001 | Banana | nucleus | 32.99 | 32.66 |
| VIT_18s0001g08090.t01 | Wine grape | cytosol, nucleus, vacuole | 36.39 | 26.1 |
Protein Annotations
| EntrezGene:100258296 | wikigene:100258296 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:AM470589 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | ProteinID:CAN70529 | ProteinID:CAN70529.1 | ProteinID:CBI36192 | ProteinID:CBI36192.3 | UniProt:D7U0P6 |
| EMBL:FN596494 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | EntrezGene:LOC100258296 | wikigene:LOC100258296 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF34 | SUPFAM:SSF54277 | UniParc:UPI0001BE4931 | ArrayExpress:VIT_09s0002g05160 |
| EnsemblPlantsGene:VIT_09s0002g05160 | EnsemblPlants:VIT_09s0002g05160.t01 | unigene:Vvi.24588 | unigene:Vvi.7329 | RefSeq:XP_002280524 | RefSeq:XP_002280524.2 |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7U0P6]
Coordinates
chr9:+:4853689..4862025
Molecular Weight (calculated)
32450.0 Da
IEP (calculated)
9.539
GRAVY (calculated)
-0.481
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRGNKILGA NRHGGPNIQA LEITHTLSHN QPSIPPGQIP PALFSTRVLL SLAHTTPFAI YKYKPCQTLP LTFQQLSHNF YEKNMSPQLP KPSPESSSAG
101: LYFNDTELTL GLPGATKSGT KRGFSDTVGL NLRGPCNTDH ASNPSENDVS GDSKPPPAKT QIVGWPPVKA SRKNVAKISK YVKVAVDGAP YLRKVDLEMY
201: GSYQQLLGSL EDMFSCFPIR NYLNERKLMD PVKGSDYMPT YEDRDGDWML VGDVPWKMFV ESCKRLRLMK SIEAIGLAPR ESQKCTSTSG SKSL
101: LYFNDTELTL GLPGATKSGT KRGFSDTVGL NLRGPCNTDH ASNPSENDVS GDSKPPPAKT QIVGWPPVKA SRKNVAKISK YVKVAVDGAP YLRKVDLEMY
201: GSYQQLLGSL EDMFSCFPIR NYLNERKLMD PVKGSDYMPT YEDRDGDWML VGDVPWKMFV ESCKRLRLMK SIEAIGLAPR ESQKCTSTSG SKSL
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.