Factsheet for VIT_07s0141g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g04680.t01	Wine grape	nucleus	64.52	71.43
KRH71338	Soybean	nucleus	76.34	70.3
KRH32098	Soybean	nucleus	63.44	67.82
VIT_14s0030g02310.t01	Wine grape	nucleus	70.43	65.83
GSMUA_Achr5P03110_001	Banana	nucleus	56.99	63.1
KRH67288	Soybean	nucleus	68.82	62.14
KRG95613	Soybean	nucleus	67.74	61.76
GSMUA_Achr4P22530_001	Banana	nucleus	59.68	61.33
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	44.62	61.03
GSMUA_Achr4P05200_001	Banana	mitochondrion	40.32	60.0
GSMUA_Achr4P21030_001	Banana	nucleus	60.75	57.07
GSMUA_Achr9P24330_001	Banana	nucleus	51.08	55.56
GSMUA_Achr11P...	Banana	nucleus	50.0	53.45
GSMUA_Achr2P12630_001	Banana	nucleus	58.06	53.2
GSMUA_Achr8P20620_001	Banana	nucleus	53.23	52.66
EER98076	Sorghum	cytosol, mitochondrion, nucleus	54.3	50.75
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	45.7	50.0
Os12t0601400-01	Rice	nucleus	52.15	49.24
Zm00001d013071_P001	Maize	nucleus	47.31	48.62
EER90734	Sorghum	cytosol, nucleus, plastid	48.39	48.39
TraesCS5D01G449400.1	Wheat	nucleus	46.77	48.07
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	45.7	48.02
TraesCS5A01G058700.1	Wheat	cytosol	54.84	47.66
TraesCS5B01G058800.1	Wheat	cytosol	54.84	47.66
TraesCS5D01G069200.1	Wheat	cytosol	54.84	47.66
Zm00001d018973_P001	Maize	nucleus	51.61	47.52
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	47.85	46.35
Zm00001d041418_P001	Maize	nucleus	54.84	44.35
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	55.91	43.7
Os03t0797800-01	Rice	nucleus	45.7	43.15
EER93778	Sorghum	cytosol, nucleus, plastid	52.15	42.92
Zm00001d013707_P001	Maize	nucleus	51.61	42.86
TraesCS5B01G381800.1	Wheat	nucleus	48.39	42.45
TraesCS5D01G388200.1	Wheat	nucleus	48.92	42.33
EES16315	Sorghum	cytosol	55.38	42.21
Zm00001d030993_P001	Maize	nucleus	45.16	42.21
Zm00001d033319_P001	Maize	nucleus	51.08	42.04
Os07t0182400-01	Rice	plastid	48.92	41.55
TraesCS5A01G378200.1	Wheat	nucleus	47.31	41.51
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	53.76	41.15
Os03t0633800-01	Rice	nucleus	50.0	41.15
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	47.31	40.74
HORVU5Hr1G106350.2	Barley	plastid	47.31	39.11
HORVU5Hr1G014290.1	Barley	mitochondrion	48.92	35.55
VIT_11s0016g03540.t01	Wine grape	nucleus	58.06	33.75
VIT_09s0002g04080.t01	Wine grape	nucleus	55.38	32.19
HORVU5Hr1G093640.1	Barley	mitochondrion	51.08	30.25
VIT_09s0002g05160.t01	Wine grape	nucleus	44.62	28.23
Zm00001d034463_P001	Maize	extracellular, golgi	45.7	26.56
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	52.15	23.66

Protein Annotations

EntrezGene:100264878	wikigene:100264878	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CBI17931	ProteinID:CBI17931.3	UniProt:D7SQK0	EMBL:FN594965	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100264878
wikigene:LOC100264878	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF11
SUPFAM:SSF54277	TIGR:TC61211	UniParc:UPI00015CAAAE	ArrayExpress:VIT_07s0141g00270	EnsemblPlantsGene:VIT_07s0141g00270	EnsemblPlants:VIT_07s0141g00270.t01
unigene:Vvi.13054	RefSeq:XP_002281696	RefSeq:XP_002281696.1	SEG:seg	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7SQK0]

Coordinates

chr7:-:165533..166671

Molecular Weight (calculated)

21012.8 Da

IEP (calculated)

5.181

GRAVY (calculated)

-0.834

Length

186 amino acids

Sequence
(BLAST)

001: MEKPVVYDNG LNLEATELRL GLPGTNEPEK QSSTSVRSKK RASPEMAEET RSKSSSCISD ADDDAPPPKA QVVGWPPVRS YRKNSFQQRK GEAEGAGMYV
101: KVSMDGAPYL RKIDLKVYKS YPELLNALEN MFKFRIGEYS EREGYNGSDY TPAYEDKDGD WMLVGDVPWE MFISSCKRLR IMKGSE

Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)

001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL

Arabidopsis Description

IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.