CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95613	Soybean	nucleus	93.69	94.61
KRH34375	Soybean	cytosol, nucleus	44.66	75.41
KRH71338	Soybean	nucleus	69.9	71.29
KRH32098	Soybean	nucleus	59.22	70.11
VIT_07s0141g00270.t01	Wine grape	nucleus	62.14	68.82
KRH69048	Soybean	nucleus	59.71	64.06
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	40.29	61.03
KRG92430	Soybean	nucleus	56.31	59.79
GSMUA_Achr5P03110_001	Banana	nucleus	47.57	58.33
GSMUA_Achr4P22530_001	Banana	nucleus	50.49	57.46
GSMUA_Achr4P05200_001	Banana	mitochondrion	34.47	56.8
GSMUA_Achr9P24330_001	Banana	nucleus	44.66	53.8
GSMUA_Achr8P20620_001	Banana	nucleus	49.03	53.72
GSMUA_Achr4P21030_001	Banana	nucleus	51.46	53.54
GSMUA_Achr11P...	Banana	nucleus	45.15	53.45
Zm00001d013071_P001	Maize	nucleus	41.75	47.51
TraesCS5D01G449400.1	Wheat	nucleus	41.75	47.51
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	40.78	47.46
Os12t0601400-01	Rice	nucleus	45.15	47.21
EER98076	Sorghum	cytosol, mitochondrion, nucleus	45.15	46.73
GSMUA_Achr2P12630_001	Banana	nucleus	45.63	46.31
KRH47514	Soybean	nucleus	41.75	45.99
KRH09813	Soybean	nucleus	41.26	45.45
EER90734	Sorghum	cytosol, nucleus, plastid	40.78	45.16
KRH44390	Soybean	nucleus	42.72	45.13
Zm00001d018973_P001	Maize	nucleus	44.17	45.05
KRH23504	Soybean	nucleus	41.26	44.97
TraesCS5B01G058800.1	Wheat	cytosol	46.6	44.86
TraesCS5D01G069200.1	Wheat	cytosol	46.6	44.86
TraesCS5A01G058700.1	Wheat	cytosol	46.6	44.86
KRH23505	Soybean	nucleus	38.84	43.72
KRH09810	Soybean	nucleus	39.32	42.86
TraesCS5D01G388200.1	Wheat	nucleus	44.66	42.79
Os03t0797800-01	Rice	nucleus	40.78	42.64
TraesCS5B01G381800.1	Wheat	nucleus	43.69	42.45
TraesCS5A01G378200.1	Wheat	nucleus	43.2	41.98
KRG92683	Soybean	nucleus	46.12	41.85
Zm00001d041418_P001	Maize	nucleus	45.63	40.87
KRH34377	Soybean	nucleus	47.09	40.59
EER93778	Sorghum	cytosol, nucleus, plastid	43.69	39.82
Os07t0182400-01	Rice	plastid	42.23	39.73
KRG96977	Soybean	nucleus	44.17	39.57
KRH68738	Soybean	nucleus	46.6	39.51
Os03t0633800-01	Rice	nucleus	42.72	38.94
KRG95616	Soybean	nucleus	47.57	38.89
Zm00001d013707_P001	Maize	nucleus	42.23	38.84
KRH32099	Soybean	nucleus	46.6	38.71
HORVU5Hr1G106350.2	Barley	plastid	42.23	38.67
EES16315	Sorghum	cytosol	45.63	38.52
Zm00001d030993_P001	Maize	nucleus	36.89	38.19
KRH67289	Soybean	nucleus	47.09	38.19
Zm00001d033319_P001	Maize	nucleus	41.75	38.05
KRH74730	Soybean	plastid	27.67	35.4
KRH71337	Soybean	nucleus	28.64	34.71
KRH34091	Soybean	cytosol, nucleus, plastid	38.84	34.63
KRH60250	Soybean	nucleus	47.57	34.15
KRH23426	Soybean	nucleus	49.03	32.9
KRH39325	Soybean	nucleus	48.54	32.57
HORVU5Hr1G014290.1	Barley	mitochondrion	39.81	32.03
KRH09902	Soybean	nucleus	49.03	31.66
KRH75635	Soybean	nucleus	48.54	31.65
KRH44313	Soybean	nucleus	49.03	31.37
HORVU5Hr1G093640.1	Barley	mitochondrion	46.12	30.25
KRG92429	Soybean	cytosol, nucleus, plastid	48.06	29.91
KRH47242	Soybean	nucleus	45.63	29.47
KRH45470	Soybean	nucleus	49.51	29.14
KRH39524	Soybean	nucleus	50.0	29.1
KRH72523	Soybean	nucleus	51.46	28.96
KRH16912	Soybean	nucleus	51.46	28.88
KRH74432	Soybean	nucleus	49.51	28.41
KRH62157	Soybean	nucleus	49.51	28.33
KRH41538	Soybean	golgi, plasma membrane	47.57	27.45
KRH52867	Soybean	nucleus	46.12	26.1
Zm00001d034463_P001	Maize	extracellular, golgi	40.29	25.94

Protein Annotations

EntrezGene:100809479	Gene3D:3.10.20.90	MapMan:35.1	EMBL:ACUP02002050	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlantsGene:GLYMA_03G158600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	UniProt:I1JNZ0	InterPro:IPR000270	EnsemblPlants:KRH67288	ProteinID:KRH67288	ProteinID:KRH67288.1
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF8	SUPFAM:SSF54277
UniParc:UPI000233A4AB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:37387237..37389010

Molecular Weight (calculated)

22665.5 Da

IEP (calculated)

4.953

GRAVY (calculated)

-0.675

Length

206 amino acids

Sequence
(BLAST)

001: MGSFETELMN LKATELRLGL PGCDETNEKS SSSSGSVVRS NKRSSPEPSV EESRCNSNGS SDSTTTSDHD QDSAQPEKVQ VVGWPPIRSF RKNSLQQQKK
101: VEQLQGDGGG MYVKVSMAGA PYLRKIDLKV YNSYPELLAA LQSLFTCTFG EYSEREGYNG SEYAPTYEDK DGDWMLVGDV PWNMFVSSCK RLKIIKGSEA
201: KGLGCL

Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)

001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL

Arabidopsis Description

IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.