Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041418_P001 | Maize | nucleus | 68.34 | 59.13 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 60.8 | 56.54 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 60.8 | 56.54 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 60.8 | 56.54 |
| EES16315 | Sorghum | cytosol | 68.84 | 56.15 |
| Os12t0601400-01 | Rice | nucleus | 54.27 | 54.82 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 43.22 | 51.19 |
| KRH34375 | Soybean | cytosol, nucleus | 30.15 | 49.18 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 62.31 | 48.44 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 30.15 | 48.0 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 40.7 | 47.37 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 38.69 | 46.95 |
| Zm00001d013707_P001 | Maize | nucleus | 52.76 | 46.88 |
| KRH32098 | Soybean | nucleus | 39.7 | 45.4 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 42.21 | 45.16 |
| Zm00001d033319_P001 | Maize | nucleus | 51.26 | 45.13 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 35.18 | 44.87 |
| GSMUA_Achr11P... | Banana | nucleus | 39.2 | 44.83 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 42.71 | 44.74 |
| Bra001899.1-P | Field mustard | nucleus | 38.19 | 44.44 |
| CDX92972 | Canola | nucleus | 38.19 | 44.44 |
| PGSC0003DMT400049677 | Potato | nucleus | 40.7 | 44.26 |
| Zm00001d013071_P001 | Maize | nucleus | 40.2 | 44.2 |
| CDX94876 | Canola | nucleus | 37.69 | 43.86 |
| PGSC0003DMT400051896 | Potato | plastid | 33.67 | 43.79 |
| Solyc06g053840.2.1 | Tomato | nucleus | 41.71 | 43.68 |
| Solyc09g065850.2.1 | Tomato | nucleus | 40.2 | 43.24 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 43.22 | 43.22 |
| Zm00001d018973_P001 | Maize | nucleus | 43.72 | 43.07 |
| CDY36883 | Canola | nucleus | 37.19 | 43.02 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.69 | 42.78 |
| Bra032521.1-P | Field mustard | nucleus | 38.69 | 42.78 |
| CDY53735 | Canola | nucleus | 36.68 | 42.44 |
| CDY10692 | Canola | nucleus | 36.68 | 42.44 |
| Bra033890.1-P | Field mustard | nucleus | 36.68 | 42.44 |
| CDY10069 | Canola | nucleus | 39.2 | 42.39 |
| AT4G14560.1 | Thale cress | nucleus | 35.68 | 42.26 |
| Bra023771.1-P | Field mustard | nucleus | 36.18 | 42.11 |
| Bra039732.1-P | Field mustard | nucleus | 36.18 | 42.11 |
| CDY40837 | Canola | nucleus | 36.18 | 42.11 |
| CDY35493 | Canola | nucleus | 36.18 | 42.11 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 39.2 | 41.94 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.2 | 41.94 |
| CDY10346 | Canola | nucleus | 36.18 | 41.86 |
| KRG92430 | Soybean | nucleus | 40.7 | 41.75 |
| KRH69048 | Soybean | nucleus | 40.2 | 41.67 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 38.19 | 40.86 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 38.19 | 40.86 |
| KRH71338 | Soybean | nucleus | 41.21 | 40.59 |
| Solyc04g054280.1.1 | Tomato | nucleus | 33.67 | 40.36 |
| PGSC0003DMT400013662 | Potato | cytosol | 38.19 | 40.0 |
| Solyc09g083280.2.1 | Tomato | nucleus | 39.2 | 39.8 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 38.19 | 39.79 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 38.19 | 39.79 |
| PGSC0003DMT400015655 | Potato | nucleus | 38.69 | 39.49 |
| Bra027504.1-P | Field mustard | nucleus | 37.69 | 39.27 |
| Solyc06g008580.2.1 | Tomato | nucleus | 37.19 | 38.95 |
| KRG95613 | Soybean | nucleus | 38.19 | 37.25 |
| KRH67288 | Soybean | nucleus | 38.19 | 36.89 |
| Zm00001d013302_P002 | Maize | nucleus | 36.18 | 31.58 |
| Zm00001d036918_P001 | Maize | nucleus | 31.16 | 31.31 |
| Zm00001d037774_P001 | Maize | cytosol | 37.69 | 30.74 |
| Zm00001d033976_P002 | Maize | nucleus | 36.18 | 30.38 |
| Zm00001d039624_P001 | Maize | nucleus | 33.17 | 30.0 |
| AT3G23030.2 | Thale cress | vacuole | 36.68 | 27.97 |
| Zm00001d008749_P002 | Maize | cytosol | 30.65 | 27.85 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 38.69 | 26.64 |
| Zm00001d009532_P001 | Maize | nucleus | 37.19 | 26.33 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 38.19 | 26.3 |
| Zm00001d043878_P001 | Maize | nucleus, plastid | 35.18 | 26.02 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 39.7 | 24.69 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 37.19 | 22.49 |
| Zm00001d041416_P001 | Maize | nucleus | 38.69 | 22.38 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 35.18 | 20.53 |
| Zm00001d024008_P001 | Maize | mitochondrion | 26.63 | 15.23 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6KFH8 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| ProteinID:ONM01869.1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF25 |
| SUPFAM:SSF54277 | UniParc:UPI000844B013 | EnsemblPlantsGene:Zm00001d030993 | EnsemblPlants:Zm00001d030993_P001 | EnsemblPlants:Zm00001d030993_T001 | SEG:seg |
Description
Aux/IAA-transcription factor 2Auxin-responsive protein IAA4
Coordinates
chr1:+:172413967..172415265
Molecular Weight (calculated)
20415.8 Da
IEP (calculated)
4.485
GRAVY (calculated)
-0.422
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVAAAASYS YYGLEAADDD VDNLRATELR LGLPGTEAAE EEEEARQAQK VAAPPPSTPR GKKRDGVSGG IDAAPPAAKA QVVGWPPVRS YRKSCFQQQQ
101: AGAKGKPAAA DEGAPGPAGG GVFVKVSMDG APYLRKVDLG TCGGYRQLRE ALEAMFLCFS GPGSGDASGG GGGGSPSDFA VTYEDKDGDL MLVGDVPFR
101: AGAKGKPAAA DEGAPGPAGG GVFVKVSMDG APYLRKVDLG TCGGYRQLRE ALEAMFLCFS GPGSGDASGG GGGGSPSDFA VTYEDKDGDL MLVGDVPFR
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.