Factsheet for Zm00001d007577_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007318_P001
Zm00001d030396_P001
Zm00001d049188_P008
Zm00001d050448_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	Zm00001d007318_P001	AT2G16370.1	21798944
AT3G18140.1	Zm00001d030396_P001	AT2G16370.1	21798944
AT3G18140.1	Zm00001d049188_P008	AT2G16370.1	21798944
AT3G18140.1	Zm00001d050448_P001	AT2G16370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08772	Sorghum	cytosol	99.68	99.68
HORVU4Hr1G003940.2	Barley	cytosol	98.42	98.42
TraesCS4B01G026200.1	Wheat	cytosol	98.1	98.1
TraesCS4A01G288600.1	Wheat	cytosol	98.1	98.1
TraesCS4D01G023600.1	Wheat	cytosol	97.78	97.78
GSMUA_Achr10P...	Banana	cytosol	94.62	94.62
Os03t0681700-01	Rice	plasma membrane	94.3	94.3
KRH11050	Soybean	cytosol	90.82	90.82
KRH21226	Soybean	cytosol	90.51	90.51
Solyc03g059310.2.1	Tomato	cytosol	64.24	86.75
Bra022283.1-P	Field mustard	cytosol	66.14	85.66
CDX92201	Canola	cytosol	82.28	85.25
AT3G18140.1	Thale cress	cytosol	81.96	84.92
CDX95783	Canola	cytosol	81.96	84.92
VIT_06s0004g04740.t01	Wine grape	cytosol	84.81	84.81
VIT_08s0007g08080.t01	Wine grape	cytosol, plastid	87.97	78.53
AT2G22040.1	Thale cress	cytosol	67.72	68.37
CDY13785	Canola	cytosol	54.43	65.65
CDY13786	Canola	cytosol	53.48	64.02
CDX76957	Canola	cytosol	64.87	62.5
Bra031226.1-P	Field mustard	cytosol	64.56	61.63

Protein Annotations

EntrezGene:100191700	Gene3D:2.130.10.10	MapMan:27.7.1.3	UniProt:B4F9U1	EMBL:BT033879	EMBL:EU965541
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929
GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:MLST8	ProteinID:ONM27116.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998
UniParc:UPI00017B62C6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	EnsemblPlantsGene:Zm00001d007577
EnsemblPlants:Zm00001d007577_P001	EnsemblPlants:Zm00001d007577_T001	:	:	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr2:-:235094843..235098442

Molecular Weight (calculated)

35318.6 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.267

Length

316 amino acids

Sequence
(BLAST)

001: MAQPSVILAT ASYDHTIRFW EAKSGRCYRT IQYPDSQVNR LEITPDKRFL AAAGNPHIRL FDVNSNSPQP VISYDSHTSN VMAVGFHCDG NWMYSGSEDG
101: TVRIWDLRTG TCQREYESRA AVNTVVLHPN QKELISGDQN GNIRVWDLAA NSCSCELVPE VDTAVRSLTV MWDGSMVVAA NNRGTCYVWR LLKGTQTITC
201: FEPLHKLQAH DGYILKCLLS PEFCDPNRYL ATASSDRTVK IWNVDGFKLE RTLVGHQRWV WDCVFSVDGA YLITASSDTT ARLWTMSTGE AIRVYQGHHK
301: ATVCCALHDG AESAPS

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.