Factsheet for AT3G18140.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92201	Canola	cytosol	97.38	97.38
Bra022283.1-P	Field mustard	cytosol	77.7	97.13
CDX95783	Canola	cytosol	97.05	97.05
KRH21226	Soybean	cytosol	88.2	85.13
KRH11050	Soybean	cytosol	87.87	84.81
Solyc03g059310.2.1	Tomato	cytosol	63.93	83.33
GSMUA_Achr10P...	Banana	cytosol	85.57	82.59
EES08772	Sorghum	cytosol	84.92	81.96
HORVU4Hr1G003940.2	Barley	cytosol	84.92	81.96
Zm00001d007577_P001	Maize	extracellular, mitochondrion	84.92	81.96
TraesCS4A01G288600.1	Wheat	cytosol	84.59	81.65
TraesCS4B01G026200.1	Wheat	cytosol	84.59	81.65
TraesCS4D01G023600.1	Wheat	cytosol	84.59	81.65
VIT_06s0004g04740.t01	Wine grape	cytosol	82.62	79.75
Os03t0681700-01	Rice	plasma membrane	80.98	78.16
AT2G22040.1	Thale cress	cytosol	76.39	74.44

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	EntrezGene:821339	UniProt:A0A178VME6	ProteinID:AEE76052.1	ArrayExpress:AT3G18140
EnsemblPlantsGene:AT3G18140	RefSeq:AT3G18140	TAIR:AT3G18140	RefSeq:AT3G18140-TAIR-G	EnsemblPlants:AT3G18140.1	TAIR:AT3G18140.1
EMBL:AY087463	Unigene:At.6055	ProteinID:BAB02026.1	EMBL:BT002312	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005975	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0031929
GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	GO:GO:0032956	GO:GO:0048571	GO:GO:1900088
GO:GO:1900091	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:MLST8	RefSeq:NP_188442.1
ProteinID:OAP06948.1	PFAM:PF00400	PO:PO:0000293	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	UniProt:Q9LV27	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00000AC63F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]

Coordinates

chr3:-:6212585..6214804

Molecular Weight (calculated)

34311.7 Da

IEP (calculated)

6.966

GRAVY (calculated)

-0.288

Length

305 amino acids

Sequence
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.