CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68863
CDX75256
CDX83601
CDX89705
CDY02264
CDY23332
CDY30950
CDY51673

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	CDX89705	AT2G16370.1	21798944
AT3G18140.1	CDY02264	AT2G16370.1	21798944
AT3G18140.1	CDX68863	AT4G32570.1	21798944
AT3G18140.1	CDX75256	AT4G32570.1	21798944
AT3G18140.1	CDX83601	AT4G32570.1	21798944
AT3G18140.1	CDY23332	AT4G32570.1	21798944
AT3G18140.1	CDY30950	AT4G32570.1	21798944
AT3G18140.1	CDY51673	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95783	Canola	cytosol	99.67	99.67
Bra022283.1-P	Field mustard	cytosol	79.67	99.59
AT3G18140.1	Thale cress	cytosol	97.38	97.38
KRH11050	Soybean	cytosol	88.52	85.44
KRH21226	Soybean	cytosol	88.2	85.13
Solyc03g059310.2.1	Tomato	cytosol	64.26	83.76
GSMUA_Achr10P...	Banana	cytosol	85.9	82.91
EES08772	Sorghum	cytosol	85.25	82.28
HORVU4Hr1G003940.2	Barley	cytosol	85.25	82.28
Zm00001d007577_P001	Maize	extracellular, mitochondrion	85.25	82.28
TraesCS4A01G288600.1	Wheat	cytosol	84.92	81.96
TraesCS4B01G026200.1	Wheat	cytosol	84.92	81.96
TraesCS4D01G023600.1	Wheat	cytosol	84.92	81.96
VIT_06s0004g04740.t01	Wine grape	cytosol	82.3	79.43
Os03t0681700-01	Rice	plasma membrane	81.31	78.48
CDY13785	Canola	cytosol	59.34	69.08
CDY13786	Canola	cytosol	57.38	66.29
CDX76957	Canola	cytosol	70.49	65.55

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	EnsemblPlants:CDX92201	ProteinID:CDX92201	ProteinID:CDX92201.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929	GO:GO:0031931
GO:GO:0031932	GO:GO:0032008	EnsemblPlantsGene:GSBRNA2T00153909001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EC7B43	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaA05g22060D

Coordinates

chrLK031871:-:755610..757619

Molecular Weight (calculated)

34332.8 Da

IEP (calculated)

7.123

GRAVY (calculated)

-0.309

Length

305 amino acids

Sequence
(BLAST)

001: MSQPCVVLAT ASYDHTIRFW EAESGRCYRT IQYPDSHVNR LEITPDKRHL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDG KWMYSGSEDG
101: TVKIWDLRAP GCQREYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTPVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.