Factsheet for GSMUA_Achr10P28590_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P08320_001
GSMUA_Achr2P14300_001
GSMUA_Achr6P01670_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	GSMUA_Achr2P14300_001	AT2G16370.1	21798944
AT3G18140.1	GSMUA_Achr2P08320_001	AT4G32570.1	21798944
AT3G18140.1	GSMUA_Achr6P01670_001	AT4G32570.1	21798944
AT3G18140.1	GSMUA_AchrUn_...	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08772	Sorghum	cytosol	94.94	94.94
HORVU4Hr1G003940.2	Barley	cytosol	94.62	94.62
Zm00001d007577_P001	Maize	extracellular, mitochondrion	94.62	94.62
TraesCS4D01G023600.1	Wheat	cytosol	94.3	94.3
TraesCS4B01G026200.1	Wheat	cytosol	94.3	94.3
TraesCS4A01G288600.1	Wheat	cytosol	94.3	94.3
Os03t0681700-01	Rice	plasma membrane	90.82	90.82
KRH11050	Soybean	cytosol	90.51	90.51
KRH21226	Soybean	cytosol	90.19	90.19
Solyc03g059310.2.1	Tomato	cytosol	64.87	87.61
CDX92201	Canola	cytosol	82.91	85.9
AT3G18140.1	Thale cress	cytosol	82.59	85.57
CDX95783	Canola	cytosol	82.59	85.57
Bra022283.1-P	Field mustard	cytosol	65.82	85.25
VIT_06s0004g04740.t01	Wine grape	cytosol	83.86	83.86
VIT_08s0007g08080.t01	Wine grape	cytosol, plastid	89.24	79.66
AT2G22040.1	Thale cress	cytosol	68.99	69.65
CDY13785	Canola	cytosol	54.43	65.65
CDY13786	Canola	cytosol	53.48	64.02
CDX76957	Canola	cytosol	64.87	62.5
Bra031226.1-P	Field mustard	cytosol	64.87	61.93

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0031929	GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	EnsemblPlantsGene:GSMUA_Achr10G28590_001
EnsemblPlants:GSMUA_Achr10P28590_001	EnsemblPlants:GSMUA_Achr10T28590_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RM83
InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI00029542D9
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:

Description

WD repeat-containing protein wat1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G28590_001]

Coordinates

chr10:-:31358668..31361757

Molecular Weight (calculated)

35421.7 Da

IEP (calculated)

6.498

GRAVY (calculated)

-0.291

Length

316 amino acids

Sequence
(BLAST)

001: MTQPSVILAT ASYDHTIRFW EAKSGRCYRT IQYPDSQVNR LEITPDKRFL AAAGNPHIRL FDVNSNSPHP VISYDSHTSN VMAVGFQCDG NWMYSGSEDG
101: TVKIWDLRTA TCQREYESRA AVNTVVLHPN QKELISGDQN GNIRVWDLAA NSCSCELVPE VDTAVRSLTV MWDGSMVVAA NNRGTCYVWR LLKGTQTMTY
201: FEPLHKLQAH DGYILKCLLS PEFCDPNRYL ATASSDHTVK IWNVDGFTLE RVLTGHQRWV WDCVFSVDGA YLITASSDTT ARLWAMSNGE TIRMYQGHHK
301: ATVCCALHDG AESPPA

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.