Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G18140.1 | Thale cress | cytosol | 74.44 | 76.39 |
| Solyc03g059310.2.1 | Tomato | cytosol | 53.99 | 72.22 |
| GSMUA_Achr10P... | Banana | cytosol | 69.65 | 68.99 |
| KRH21226 | Soybean | cytosol | 69.01 | 68.35 |
| KRH11050 | Soybean | cytosol | 69.01 | 68.35 |
| TraesCS4D01G023600.1 | Wheat | cytosol | 68.69 | 68.04 |
| TraesCS4B01G026200.1 | Wheat | cytosol | 68.69 | 68.04 |
| TraesCS4A01G288600.1 | Wheat | cytosol | 68.69 | 68.04 |
| Zm00001d007577_P001 | Maize | extracellular, mitochondrion | 68.37 | 67.72 |
| HORVU4Hr1G003940.2 | Barley | cytosol | 68.37 | 67.72 |
| EES08772 | Sorghum | cytosol | 68.37 | 67.72 |
| Os03t0681700-01 | Rice | plasma membrane | 66.13 | 65.51 |
| VIT_06s0004g04740.t01 | Wine grape | cytosol | 65.81 | 65.19 |
| CDY13785 | Canola | cytosol | 53.99 | 64.5 |
| CDY13786 | Canola | cytosol | 52.72 | 62.5 |
| CDX76957 | Canola | cytosol | 60.06 | 57.32 |
| Bra031226.1-P | Field mustard | cytosol | 60.06 | 56.8 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:27.7.1.3 | EntrezGene:816739 | ProteinID:AEC07254.1 | ArrayExpress:AT2G22040 | EnsemblPlantsGene:AT2G22040 |
| RefSeq:AT2G22040 | TAIR:AT2G22040 | RefSeq:AT2G22040-TAIR-G | EnsemblPlants:AT2G22040.1 | TAIR:AT2G22040.1 | Unigene:At.52863 |
| UniProt:F4IIK6 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0031929 | GO:GO:0031931 | GO:GO:0031932 | GO:GO:0032008 | GO:GO:0032956 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:MLST8 | RefSeq:NP_179795.2 | PFAM:PF00400 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19842 | PANTHER:PTHR19842:SF0 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0001E92BFF | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIK6]
Coordinates
chr2:-:9374438..9376260
Molecular Weight (calculated)
35953.9 Da
IEP (calculated)
7.711
GRAVY (calculated)
-0.394
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MFENKPDDSP VYLATASHDQ TIRLWQARTG RCYFSFRYPD LHVNRLELTP EKGKLVAACN PHIRLFDLRS YNPHIPVRNF VSHTKNVMAV GFQYTGHMMY
101: SGSEDGSVKI WDLRVRECQR EFRSVSPVNT VVLHPNQTEL ISGDQNGNIR VWDLRADLCS CELVPEVGTP IRSLTVMWDG TMVVAANDRG TCYVWRSLCE
201: RQTMTEFEPL HKLQAHNSHI LKCLLSPGNN RYLATASSDK TVKIWNLDGF KLEKVLTGHE RWVWDCDFSM DGEYLVTASS DTTARLWSMR AGKEEMVYQA
301: HRKATVCCTL LRD
101: SGSEDGSVKI WDLRVRECQR EFRSVSPVNT VVLHPNQTEL ISGDQNGNIR VWDLRADLCS CELVPEVGTP IRSLTVMWDG TMVVAANDRG TCYVWRSLCE
201: RQTMTEFEPL HKLQAHNSHI LKCLLSPGNN RYLATASSDK TVKIWNLDGF KLEKVLTGHE RWVWDCDFSM DGEYLVTASS DTTARLWSMR AGKEEMVYQA
301: HRKATVCCTL LRD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.