CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13785	Canola	cytosol	75.3	94.27
Bra031226.1-P	Field mustard	cytosol	94.82	93.96
CDY13786	Canola	cytosol	70.73	87.88
CDX92201	Canola	cytosol	65.55	70.49
CDX95783	Canola	cytosol	65.24	70.16
TraesCS4D01G023600.1	Wheat	cytosol	62.8	65.19
TraesCS4B01G026200.1	Wheat	cytosol	62.8	65.19
TraesCS4A01G288600.1	Wheat	cytosol	62.8	65.19
Zm00001d007577_P001	Maize	extracellular, mitochondrion	62.5	64.87
HORVU4Hr1G003940.2	Barley	cytosol	62.5	64.87
GSMUA_Achr10P...	Banana	cytosol	62.5	64.87
EES08772	Sorghum	cytosol	62.5	64.87
KRH11050	Soybean	cytosol	62.2	64.56
Solyc03g059310.2.1	Tomato	cytosol	46.04	64.53
KRH21226	Soybean	cytosol	61.89	64.24
Os03t0681700-01	Rice	plasma membrane	60.98	63.29
VIT_06s0004g04740.t01	Wine grape	cytosol	60.67	62.97
AT2G22040.1	Thale cress	cytosol	57.32	60.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	EnsemblPlants:CDX76957	ProteinID:CDX76957	ProteinID:CDX76957.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929	GO:GO:0031931
GO:GO:0031932	GO:GO:0032008	EnsemblPlantsGene:GSBRNA2T00127498001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF16F2	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaC08g35430D

Coordinates

chrLK031808:+:2263676..2265675

Molecular Weight (calculated)

36980.8 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.276

Length

328 amino acids

Sequence
(BLAST)

001: MSQPSVIIAT ASYDFTIRFW EAQSASCYRA INYPAVPQRE LDEGRNPQNV NKLEISPDKR HLAAACNPYI RLFDINFHHG HVRTFVAHTS NVTAVGFHAD
101: GNSMYSGSED GTVRIWDLRA PNRPEVYERN CLKAYHLDGS VTPINTVVLH PNQIELISGD QDGIIRVWDT RMNSCTIELV PEPDTAIRSL SVMRDGSMLA
201: AANDGGTCYI WNIVRESQVI TKFEPIHKLQ AHNRHILKCV LSPDNKYLAT ASSDKTVKIW NVDSFTLDKV LTGHQRWVWD CAFSVDAKFI LTASSDMTAR
301: LWSMEEGNEL RVYRGHNKAI VCCALNDV

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.