Factsheet for Bra031226.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76957	Canola	cytosol	93.96	94.82
CDY13785	Canola	cytosol	72.21	91.22
CDY13786	Canola	cytosol	71.0	89.02
Bra022283.1-P	Field mustard	cytosol	52.57	71.31
Solyc03g059310.2.1	Tomato	cytosol	45.92	64.96
TraesCS4D01G023600.1	Wheat	cytosol	61.93	64.87
GSMUA_Achr10P...	Banana	cytosol	61.93	64.87
TraesCS4B01G026200.1	Wheat	cytosol	61.93	64.87
TraesCS4A01G288600.1	Wheat	cytosol	61.93	64.87
Zm00001d007577_P001	Maize	extracellular, mitochondrion	61.63	64.56
HORVU4Hr1G003940.2	Barley	cytosol	61.63	64.56
EES08772	Sorghum	cytosol	61.63	64.56
KRH11050	Soybean	cytosol	61.33	64.24
KRH21226	Soybean	cytosol	61.03	63.92
Os03t0681700-01	Rice	plasma membrane	60.73	63.61
VIT_06s0004g04740.t01	Wine grape	cytosol	59.52	62.34
AT2G22040.1	Thale cress	cytosol	56.8	60.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	EnsemblPlantsGene:Bra031226	EnsemblPlants:Bra031226.1	EnsemblPlants:Bra031226.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929	GO:GO:0031931
GO:GO:0031932	GO:GO:0032008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4ER03
InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002542F5D	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT3G18140 (E=4e-082) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA09:+:31909423..31911473

Molecular Weight (calculated)

37277.1 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.307

Length

331 amino acids

Sequence
(BLAST)

001: MSQPSVIIAT ASYDYTIRFW EAQSASCYRA INCPAVPQRE LDEGRNPQHV NKLEISPDKR YLAAACNPYI RLFDINSHHG HDQRMAPFVG HTSNVMAVGF
101: HADGNSMYSG SEDGTVRIWD LRAPNRPEVY ERNCLKAYHL DGSVTPINTV VLHPNQIELI SGDQDGIIRV WDTRMNSCTI ELVPEPDTAI RSLSVMRDGT
201: MLAAANDGGT CFIWNILRES QVTTEFEPIH KLQAHDRQIL KCVLSPDNKY LATASSDKTV KIWNVDSFTL DKVLTGHQRW VWDCAFSVDA KFILTASSDM
301: TARLWSMEEG NELRVYRGHN KAIVCCALND V

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.