Factsheet for VIT_08s0007g08080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11050	Soybean	cytosol	83.05	93.04
KRH21226	Soybean	cytosol	83.05	93.04
Solyc03g059310.2.1	Tomato	cytosol	60.45	91.45
GSMUA_Achr10P...	Banana	cytosol	79.66	89.24
EES08772	Sorghum	cytosol	78.81	88.29
HORVU4Hr1G003940.2	Barley	cytosol	78.81	88.29
TraesCS4A01G288600.1	Wheat	cytosol	78.53	87.97
TraesCS4B01G026200.1	Wheat	cytosol	78.53	87.97
Zm00001d007577_P001	Maize	extracellular, mitochondrion	78.53	87.97
TraesCS4D01G023600.1	Wheat	cytosol	78.25	87.66
VIT_06s0004g04740.t01	Wine grape	cytosol	75.71	84.81
Os03t0681700-01	Rice	plasma membrane	75.14	84.18

Protein Annotations

EntrezGene:100267619	wikigene:100267619	Gene3D:2.130.10.10	MapMan:27.7.1.3	ProteinID:CCB55153	ProteinID:CCB55153.1
UniProt:F6HL46	EMBL:FN595991	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0031929	GO:GO:0031931	GO:GO:0031932	GO:GO:0032008
GO:GO:0032956	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100267619	wikigene:LOC100267619
InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI00021098EF
ArrayExpress:VIT_08s0007g08080	EnsemblPlantsGene:VIT_08s0007g08080	EnsemblPlants:VIT_08s0007g08080.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	RefSeq:XP_002283283	RefSeq:XP_002283283.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:21435392..21441951

Molecular Weight (calculated)

39772.2 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.279

Length

354 amino acids

Sequence
(BLAST)

001: MPLFLCNSPK PFQTLIPTTL PTIRIIQVFS AIKRRAIKMT QPSVILATAS YDHTIRFWEA KSGRCYRTIQ YPDSQVNRLE ITPDKRQLAA AGNPHIRLFD
101: VNSSTTQPAR SFDSHTNNVM AVGFQCDGKW MYSGSEDGTV KIWDMRAREC QREYESRAAV NTVVLHPNQT ELISGDQNGN IRVWDLTANS CSCELVPEVD
201: TAVRSLTVMW DGSLVVAANN HGTCYVWRLL RGNQTMTNFE PLHKLQAHDG YILKCLLSPE FCEPHRYLAT ASSDHTVKIW NVDGFTLEKT LVGHQRWVWD
301: CVFSVDGAYL ITASSDTTAR LWSMSNGQDI KVYQGHHKAT VCCALHDGAE PSAA

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.