Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83601 | Canola | mitochondrion | 73.08 | 58.56 |
| CDY23332 | Canola | nucleus | 60.68 | 39.89 |
| CDY51673 | Canola | nucleus | 60.68 | 39.66 |
| Bra040086.1-P | Field mustard | nucleus | 58.97 | 38.66 |
| AT4G32570.1 | Thale cress | nucleus | 53.85 | 34.9 |
| CDX68863 | Canola | nucleus | 49.15 | 33.43 |
| CDX75256 | Canola | nucleus | 48.72 | 33.04 |
| KRH52520 | Soybean | cytosol, plastid | 32.05 | 18.16 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 33.33 | 17.69 |
| KRH61848 | Soybean | cytosol, plastid | 31.2 | 17.59 |
| PGSC0003DMT400067114 | Potato | nucleus | 29.49 | 16.16 |
| KRH05071 | Soybean | nucleus | 26.07 | 16.09 |
| Solyc06g065650.2.1 | Tomato | nucleus | 29.06 | 15.93 |
| GSMUA_Achr2P08320_001 | Banana | nucleus | 20.09 | 15.02 |
| GSMUA_Achr6P01670_001 | Banana | cytosol | 19.66 | 12.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.81 | 11.31 |
Protein Annotations
| EnsemblPlants:CDY30950 | EnsemblPlantsGene:GSBRNA2T00046521001 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF8 | ProteinID:CDY30950 | ProteinID:CDY30950.1 |
| SEG:seg | UniParc:UPI0004EDAD5E | UniProt:A0A078GWT5 | MapMan:35.1 | : | : |
Description
BnaA06g19630DBnaA06g19630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWT5]
Coordinates
chrLK032264:-:394120..395357
Molecular Weight (calculated)
26085.2 Da
IEP (calculated)
9.060
GRAVY (calculated)
-0.438
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MILMCRRRSC ELTRQQWGGG DHLDGRQLLG PRSEVSGSIM SNRFLGNKRS NSDSQFTAQD HPETLHWSKQ MLRNGPGSLS MNMNHMANQP PRGGGGQISH
101: LLHQLSSSRF KDENVVPSVI SQTAADEGSR TGMKGPGVMS PFTMPNPSRF ECFTPSRCDV SSLVMLCPQV SFNLRTNYCS HQSRTCKALC LYKHVNSCSL
201: VNSCSLVYIN FYSQHNTLLH SSHIFSQVPS QVLF
101: LLHQLSSSRF KDENVVPSVI SQTAADEGSR TGMKGPGVMS PFTMPNPSRF ECFTPSRCDV SSLVMLCPQV SFNLRTNYCS HQSRTCKALC LYKHVNSCSL
201: VNSCSLVYIN FYSQHNTLLH SSHIFSQVPS QVLF
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGDFFLKKT RFQQKFWLAS YKY
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGDFFLKKT RFQQKFWLAS YKY
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.