Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra020748.1-P | Field mustard | plastid | 98.96 | 96.74 |
CDY05264 | Canola | plastid | 97.5 | 95.51 |
AT3G06430.1 | Thale cress | plastid | 89.58 | 88.48 |
VIT_05s0020g00690.t01 | Wine grape | plastid | 75.21 | 72.49 |
KRH02451 | Soybean | plastid | 70.83 | 69.67 |
KRH02371 | Soybean | plastid | 70.42 | 69.26 |
PGSC0003DMT400011734 | Potato | plastid | 66.04 | 64.04 |
Solyc12g098990.1.1 | Tomato | plastid | 65.83 | 63.84 |
PGSC0003DMT400022191 | Potato | plastid | 64.79 | 62.08 |
GSMUA_Achr11P... | Banana | plastid | 68.96 | 60.96 |
Solyc01g057200.2.1 | Tomato | plastid | 59.58 | 60.85 |
Os03t0309800-02 | Rice | plastid | 60.62 | 58.08 |
KRH37687 | Soybean | plastid | 55.42 | 54.85 |
TraesCS4B01G138200.1 | Wheat | cytosol, mitochondrion, plastid | 59.79 | 54.46 |
TraesCS4A01G178100.5 | Wheat | plastid | 60.62 | 53.79 |
TraesCS4D01G132900.3 | Wheat | plastid | 60.62 | 53.79 |
EER97871 | Sorghum | plastid | 62.29 | 53.39 |
Zm00001d018693_P001 | Maize | plastid | 60.62 | 50.96 |
HORVU4Hr1G024360.2 | Barley | endoplasmic reticulum, vacuole | 60.0 | 49.83 |
CDX78150 | Canola | plastid | 35.0 | 34.64 |
CDX86283 | Canola | plastid | 35.83 | 33.86 |
CDX85360 | Canola | plastid | 35.42 | 33.66 |
CDX73576 | Canola | plastid | 34.58 | 33.27 |
CDY41990 | Canola | plastid | 22.5 | 22.93 |
CDY42639 | Canola | plastid | 22.5 | 22.36 |
CDX71198 | Canola | cytosol | 19.58 | 16.61 |
CDY06027 | Canola | plastid | 18.12 | 16.38 |
CDX71917 | Canola | plastid | 18.12 | 15.96 |
CDY31666 | Canola | cytosol | 18.75 | 14.45 |
CDX84260 | Canola | cytosol, nucleus, plastid | 19.17 | 14.31 |
CDX98345 | Canola | cytosol | 9.17 | 14.15 |
CDY64953 | Canola | cytosol | 8.54 | 14.09 |
CDY31603 | Canola | plastid | 18.33 | 13.27 |
CDY32056 | Canola | plastid | 22.29 | 13.23 |
CDX71562 | Canola | mitochondrion, plastid | 18.33 | 12.59 |
CDX74617 | Canola | mitochondrion | 9.17 | 12.54 |
CDY29249 | Canola | plastid | 20.0 | 11.75 |
CDY56509 | Canola | plastid | 19.79 | 11.61 |
CDY15384 | Canola | cytosol | 9.38 | 10.56 |
CDY23832 | Canola | plastid | 17.71 | 10.39 |
CDX79920 | Canola | cytosol, plastid | 17.29 | 10.16 |
CDX73117 | Canola | plastid | 17.92 | 9.97 |
CDY45398 | Canola | plastid | 17.92 | 9.95 |
CDY19091 | Canola | cytosol | 15.0 | 9.88 |
CDY56616 | Canola | plastid | 15.0 | 9.13 |
CDY10802 | Canola | plastid | 16.04 | 9.07 |
CDY52317 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:CDY24692 | EnsemblPlantsGene:GSBRNA2T00027076001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF301 |
PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:CDY24692 | ProteinID:CDY24692.1 | SEG:seg |
TIGRFAMs:TIGR00756 | UniParc:UPI0004EE4A8C | UniProt:A0A078GHP8 | MapMan:35.1 | : | : |
Description
BnaA05g30910DBnaA05g30910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHP8]
Coordinates
chrLK032162:+:484160..485960
Molecular Weight (calculated)
55026.3 Da
IEP (calculated)
7.292
GRAVY (calculated)
-0.400
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMSLSFSS SLCSSRLPES KRIFHHREPT FVRCVLAASK SSPGGGGATA TTKKRLWKEG EFPGITEHAN TRRAPMKNVK KKLDRRSKAN GWACTVTETL
101: SDLIAKKQWL QALEVFEMLR EQPFYQPKEG TYMKLLVLLG KSGQPHRAQK VFDEMLEEGL EPTAELYTAL LGAYCRSNLI DSAFSVLERM KALPQCQPDV
201: YTYSTLLKAC VDASLFDLVE SLYREMDERL ITPNTVTQNI VLSGYGRVGR FDQMEKVLSD MLVSTECKPD VWTMNIILSV FGNMGKIDMM ESWYEKFRNF
301: GIEPETRSFN ILIGAYGKKR MYDKMSSVME YMRKLEFPWT TSTYNNIIEA FADVGDAKNM EYTFDQMRSE GMKADTKTFC CLINGYANAG LFHKVISSVQ
401: LAAKFEIPEN TSFYNAVISA CAKADDLIEM ERVYTRMKER ECVRDSRTFE IMVEAYEKEG MNDKIYYLEQ ERQKEENLPR
101: SDLIAKKQWL QALEVFEMLR EQPFYQPKEG TYMKLLVLLG KSGQPHRAQK VFDEMLEEGL EPTAELYTAL LGAYCRSNLI DSAFSVLERM KALPQCQPDV
201: YTYSTLLKAC VDASLFDLVE SLYREMDERL ITPNTVTQNI VLSGYGRVGR FDQMEKVLSD MLVSTECKPD VWTMNIILSV FGNMGKIDMM ESWYEKFRNF
301: GIEPETRSFN ILIGAYGKKR MYDKMSSVME YMRKLEFPWT TSTYNNIIEA FADVGDAKNM EYTFDQMRSE GMKADTKTFC CLINGYANAG LFHKVISSVQ
401: LAAKFEIPEN TSFYNAVISA CAKADDLIEM ERVYTRMKER ECVRDSRTFE IMVEAYEKEG MNDKIYYLEQ ERQKEENLPR
001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
Arabidopsis Description
EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.