CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDX93488
CDX94957
CDY20678
CDY29825
CDY31070
CDY43132
CDY46403
CDY48959
CDY50692
CDY54644
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41070.1	CDX93488	AT1G09700.1	15821876
AT5G41070.1	CDX94957	AT1G09700.1	15821876
AT5G41070.1	CDY20678	AT1G09700.1	15821876
AT5G41070.1	CDY31070	AT1G09700.1	15821876
AT5G41070.1	CDY43132	AT3G03300.1	15821876
AT5G41070.1	CDY50692	AT3G03300.1	15821876
AT5G41070.1	CDY29825	AT3G20420.1	21798944
AT5G41070.1	CDY54644	AT3G20420.1	21798944
AT5G41070.1	CDX86457	AT3G27960.1	21798944
AT5G41070.1	CDY58518	AT3G27960.1	21798944
AT5G41070.1	CDY46403	AT5G41070.1	15821876
AT5G41070.1	CDY48959	AT5G41070.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48959	Canola	nucleus	87.8	90.68
AT5G41070.1	Thale cress	nucleus	72.41	69.47
CDY00177	Canola	nucleus	53.32	57.1
CDY12250	Canola	nucleus	52.79	56.7
CDY34199	Canola	nucleus	53.32	53.89
CDY28511	Canola	nucleus	53.58	53.58
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.46	40.96
TraesCS5A01G290100.2	Wheat	nucleus	38.73	40.22
TraesCS5B01G289100.1	Wheat	nucleus	38.46	39.62
VIT_14s0068g01520.t01	Wine grape	nucleus	46.95	36.8
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	38.73	36.14
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	41.11	36.05
CDY15737	Canola	cytosol	41.11	35.8
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	41.11	35.8
CDY30490	Canola	nucleus	41.11	35.71
Os09t0508500-02	Rice	nucleus	36.34	33.91
CDY11449	Canola	nucleus	22.28	25.38
CDX76663	Canola	cytosol	22.55	25.37
CDX93488	Canola	plastid	17.77	24.36
CDX94957	Canola	cytosol, nucleus, plastid	17.77	23.67
CDY20678	Canola	cytosol	16.45	22.38
CDY31070	Canola	endoplasmic reticulum, golgi	16.45	19.31

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A078IAX8	EnsemblPlants:CDY46403	ProteinID:CDY46403	ProteinID:CDY46403.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00083946001	InterPro:IPR014720
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI0004EEDE98	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

BnaC04g33220DBnaC04g33220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAX8]

Coordinates

chrLK032665:-:149830..151503

Molecular Weight (calculated)

41804.4 Da

IEP (calculated)

9.760

GRAVY (calculated)

-0.556

Length

377 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RAPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSYHFPAFT CTVELAGMSF TGESAKTKKQ AEKNAAIAAC LSLFLLNHLD SMGGKENGEE KEQEVVARVL SRFKPKEVRR RETTDQWRRR
201: TSQQDTNKDL LFERLRWINL LTYEHSLPSS STKKQYKKTS FVSHTQSQAS ITNLQPFKGI SSQEAKAETE MMITTKSFPL PVAAHHKAKL YESSSGGYSN
301: QIPFSDRGRF SFVGGCNRLA PAVQIRSVIP VFAAPASKPN PSPSTSSINS CSVPKTPGLG GHEKNLTQTK IVDQTHD

Best Arabidopsis Sequence Match ( AT5G41070.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS

Arabidopsis Description

DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.