CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDX93488
CDX94957
CDY20678
CDY29825
CDY31070
CDY43132
CDY46403
CDY48959
CDY50692
CDY54644
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41070.1	CDX93488	AT1G09700.1	15821876
AT5G41070.1	CDX94957	AT1G09700.1	15821876
AT5G41070.1	CDY20678	AT1G09700.1	15821876
AT5G41070.1	CDY31070	AT1G09700.1	15821876
AT5G41070.1	CDY43132	AT3G03300.1	15821876
AT5G41070.1	CDY50692	AT3G03300.1	15821876
AT5G41070.1	CDY29825	AT3G20420.1	21798944
AT5G41070.1	CDY54644	AT3G20420.1	21798944
AT5G41070.1	CDX86457	AT3G27960.1	21798944
AT5G41070.1	CDY58518	AT3G27960.1	21798944
AT5G41070.1	CDY46403	AT5G41070.1	15821876
AT5G41070.1	CDY48959	AT5G41070.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025523.1-P	Field mustard	nucleus	100.0	100.0
CDY46403	Canola	nucleus	90.68	87.8
AT5G41070.1	Thale cress	nucleus	73.7	68.45
CDY00177	Canola	nucleus	53.97	55.97
CDY12250	Canola	nucleus	53.15	55.27
CDY34199	Canola	nucleus	54.79	53.62
CDY28511	Canola	nucleus	55.34	53.58
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.82	42.09
TraesCS5A01G290100.2	Wheat	nucleus	40.82	41.05
TraesCS5B01G289100.1	Wheat	nucleus	40.82	40.71
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	41.1	37.13
VIT_14s0068g01520.t01	Wine grape	nucleus	48.22	36.59
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	41.64	35.35
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	41.92	35.33
CDY30490	Canola	nucleus	41.92	35.25
CDY15737	Canola	cytosol	41.37	34.87
Os09t0508500-02	Rice	nucleus	38.08	34.41
CDY11449	Canola	nucleus	23.29	25.68
CDX76663	Canola	cytosol	23.29	25.37
CDX93488	Canola	plastid	18.08	24.0
CDX94957	Canola	cytosol, nucleus, plastid	18.08	23.32
CDY20678	Canola	cytosol	16.71	22.02
CDY31070	Canola	endoplasmic reticulum, golgi	16.71	19.0

Protein Annotations

EnsemblPlants:CDY48959	EnsemblPlantsGene:GSBRNA2T00092087001	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115	PFAM:PF00035
PFscan:PS50137	ProteinID:CDY48959	ProteinID:CDY48959.1	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI00025450CB	UniProt:A0A078IHS3	MapMan:35.1	:	:	:

Description

BnaA04g10810DBnaA04g10810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHS3]

Coordinates

chrLK032804:-:96038..97800

Molecular Weight (calculated)

40197.4 Da

IEP (calculated)

10.044

GRAVY (calculated)

-0.638

Length

365 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCIREGPDHA PRFKASVNFN GEIFKSPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSYHFPAFS CTVELAGMSF TGESAKTKKQ AEKNAAIAAW SSLKKMASLD SMGGKENGEE KEQEVVARVL SRFKPKEVRR RETTNQWRRR
201: TSQQDTNKDL SERLRWINLL TYEPSKSQAS RTNLQQFKGI SLQEAKEETE MMITTKSFPL PVAAHHKARL NESSSGGCSN QIPFSDRGRF SFVGGCNRLA
301: PAVQIRSVIP VFAAPASKPN PTPSTSSSSS SSSSSINSCS VPKTPGLGGQ EKNLTQTKNV DQTHD

Best Arabidopsis Sequence Match ( AT5G41070.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS

Arabidopsis Description

DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.