Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025523.1-P | Field mustard | nucleus | 68.45 | 73.7 |
| CDY48959 | Canola | nucleus | 68.45 | 73.7 |
| CDY46403 | Canola | nucleus | 69.47 | 72.41 |
| AT3G26932.2 | Thale cress | nucleus | 55.22 | 60.45 |
| Zm00001d006103_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 39.69 | 44.07 |
| TraesCS5A01G290100.2 | Wheat | nucleus | 37.91 | 41.05 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 37.66 | 40.44 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 48.85 | 39.92 |
| AT2G28380.1 | Thale cress | cytosol | 40.97 | 37.1 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 37.91 | 36.88 |
| Os09t0508500-02 | Rice | nucleus | 33.84 | 32.92 |
| AT3G62800.1 | Thale cress | nucleus | 20.1 | 22.25 |
| AT1G09700.1 | Thale cress | plastid | 16.03 | 15.04 |
Protein Annotations
| Gene3D:3.30.160.20 | MapMan:35.1 | EntrezGene:834109 | ProteinID:AED94633.1 | EMBL:AK117808 | ArrayExpress:AT5G41070 |
| EnsemblPlantsGene:AT5G41070 | RefSeq:AT5G41070 | TAIR:AT5G41070 | RefSeq:AT5G41070-TAIR-G | EnsemblPlants:AT5G41070.1 | TAIR:AT5G41070.1 |
| ProteinID:BAB09709.1 | EMBL:BT009653 | Symbol:DRB5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR014720 | RefSeq:NP_198923.2 |
| PFAM:PF00035 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS50137 | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF115 | UniProt:Q8GY79 | SMART:SM00358 |
| SUPFAM:SSF54768 | UniParc:UPI00000ADE21 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
Coordinates
chr5:+:16438265..16440055
Molecular Weight (calculated)
43637.5 Da
IEP (calculated)
9.822
GRAVY (calculated)
-0.661
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.