Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039103.1-P | Field mustard | nucleus | 94.6 | 94.87 |
| CDY12250 | Canola | nucleus | 94.03 | 94.3 |
| CDY34199 | Canola | nucleus | 80.68 | 76.14 |
| CDY28511 | Canola | nucleus | 80.4 | 75.07 |
| AT3G26932.2 | Thale cress | nucleus | 73.3 | 71.87 |
| CDY48959 | Canola | nucleus | 55.97 | 53.97 |
| CDY46403 | Canola | nucleus | 57.1 | 53.32 |
| Zm00001d006103_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 42.33 | 42.09 |
| TraesCS5A01G290100.2 | Wheat | nucleus | 42.61 | 41.32 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 42.33 | 40.71 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 43.18 | 37.62 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 49.43 | 36.17 |
| Os09t0508500-02 | Rice | nucleus | 38.64 | 33.66 |
| CDY04559 | Canola | cytosol, mitochondrion, nucleus, plastid | 40.62 | 33.26 |
| CDX77176 | Canola | cytosol, mitochondrion, nucleus, plastid | 40.62 | 33.03 |
| CDY15737 | Canola | cytosol | 40.62 | 33.03 |
| CDY30490 | Canola | nucleus | 40.62 | 32.95 |
| CDY11449 | Canola | nucleus | 25.28 | 26.89 |
| CDX76663 | Canola | cytosol | 24.72 | 25.97 |
| CDX93488 | Canola | plastid | 19.6 | 25.09 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 19.6 | 24.38 |
| CDY20678 | Canola | cytosol | 18.47 | 23.47 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 18.47 | 20.25 |
Protein Annotations
| EnsemblPlants:CDY00177 | EnsemblPlantsGene:GSBRNA2T00109695001 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF115 | PFAM:PF00035 | PFscan:PS50137 | ProteinID:CDY00177 | ProteinID:CDY00177.1 | SEG:seg |
| SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0004EDEE58 | MapMan:35.1 | : | : |
Description
BnaC09g01240D
Coordinates
chrLK031916:+:1178177..1179669
Molecular Weight (calculated)
39328.1 Da
IEP (calculated)
9.957
GRAVY (calculated)
-0.582
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQEVA QRSCFNLPSY TCTREGPDHA PRFKACVNFN GEMFESPTYC STLRQAEHTA AEVALIALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVEIAGMSF IGESAKTKKQ AEKNAAITAW FSLRRMPSMD SPVEKRGEEE KEREVVARVL SRFRPKEVKR REQHHSRRRA
201: IRQETTTTRE FLSEKLRLIN PYTNEPSSSS LKHHQTLPSR LNLQQQQYRV KSLLEKSQEH AGIISSSSME RTNCYSKLLP FPEMFVGGGG GFQKLAPAVH
301: IRSVIPVCSA PPPKLSPSSA PSSLGSGDQE KKPLRLESNP CLKIVPFDQP ML
101: LDLPVYTSVR SGPGHIPTFS CTVEIAGMSF IGESAKTKKQ AEKNAAITAW FSLRRMPSMD SPVEKRGEEE KEREVVARVL SRFRPKEVKR REQHHSRRRA
201: IRQETTTTRE FLSEKLRLIN PYTNEPSSSS LKHHQTLPSR LNLQQQQYRV KSLLEKSQEH AGIISSSSME RTNCYSKLLP FPEMFVGGGG GFQKLAPAVH
301: IRSVIPVCSA PPPKLSPSSA PSSLGSGDQE KKPLRLESNP CLKIVPFDQP ML
001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
Arabidopsis Description
DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.