CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	CDX73678	AT3G51920.1	17360592
AT2G28380.1	CDX95314	AT3G51920.1	17360592
AT2G28380.1	CDY23174	AT3G51920.1	17360592
AT2G28380.1	CDY06478	AT4G14640.1	17360592
AT2G28380.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	98.37	98.37
CDY15737	Canola	cytosol	93.26	92.61
CDY30490	Canola	nucleus	83.95	83.18
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	83.49	82.91
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	29.77	82.58
KRG90046	Soybean	nucleus	16.74	80.0
KRH58007	Soybean	nucleus	15.81	75.56
AT2G28380.1	Thale cress	cytosol	76.05	75.35
KRH25014	Soybean	cytosol, nucleus, plastid	59.77	64.09
KRH29911	Soybean	cytosol, nucleus, plastid	60.7	63.5
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	58.6	61.31
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	58.84	61.26
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	55.58	60.81
PGSC0003DMT400020800	Potato	nucleus	57.67	60.64
Solyc11g069460.1.1	Tomato	nucleus	57.21	59.42
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	55.35	52.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.72	52.14
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	53.49	48.94
Os10t0480500-01	Rice	cytosol, nucleus, plastid	53.49	44.75
Zm00001d032679_P001	Maize	nucleus	53.26	44.47
TraesCS1A01G157700.3	Wheat	nucleus	54.19	44.3
TraesCS1B01G174000.1	Wheat	nucleus	54.19	44.21
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	53.26	44.04
HORVU1Hr1G041820.1	Barley	nucleus	53.95	44.02
TraesCS1D01G155300.1	Wheat	nucleus	54.19	43.8
KXG38314	Sorghum	mitochondrion, nucleus	52.33	41.67
CDY48959	Canola	nucleus	35.35	41.64
CDY12250	Canola	nucleus	33.95	41.6
CDY46403	Canola	nucleus	36.05	41.11
CDY00177	Canola	nucleus	33.26	40.62
CDY28511	Canola	nucleus	35.35	40.32
CDY34199	Canola	nucleus	34.65	39.95
CDY11449	Canola	nucleus	21.4	27.79
CDX76663	Canola	cytosol	21.4	27.46
CDX93488	Canola	plastid	17.21	26.91
CDX94957	Canola	cytosol, nucleus, plastid	17.21	26.15
CDY20678	Canola	cytosol	16.28	25.27
CDY31070	Canola	endoplasmic reticulum, golgi	16.05	21.5

Protein Annotations

EnsemblPlants:CDY04559	EnsemblPlantsGene:GSBRNA2T00118743001	Gene3D:3.30.160.20	InterPro:IPR014720	InterPro:dsRBD_dom	ncoils:Coil
PANTHER:PTHR10910	PANTHER:PTHR10910:SF141	PFAM:PF00035	PFscan:PS50137	ProteinID:CDY04559	ProteinID:CDY04559.1
SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0004EF3B68	MapMan:35.1	:

Description

BnaA07g13850D

Coordinates

chrLK031955:-:765338..767167

Molecular Weight (calculated)

47029.2 Da

IEP (calculated)

10.254

GRAVY (calculated)

-0.489

Length

430 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCLREGPDHA PRFKATVNFN GEIFESPHYC STLRQAEHSA AEVALAALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDQAKNKKQ AEKNAAMAAW SSLKQLAKET SSGMPEGENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKRFFMQ SPRPTSPQPC RAATSRILPF ICPQPSSRSR SVSAASVERA IASALENRNY RPQQRFATPG TAAAPPYVPV RHLRSTCHRG MAPPVTMRTS
301: VPVFSAPPPR PPPPSANTQQ QIPSVYVPSM MRAAPVRIAP PVTIRTAAPV FASLPVRKVN IQNPPKSMTK VDETKVQEKE ERTTLVLPDS LETEEEGSAK
401: PVSKSVKETE RAAAKGEQET ARERLENLKI

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.