Factsheet for VIT_06s0004g02810.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G28380.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G28380.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT2G28380.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT2G28380.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G28380.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G28380.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	31.96	85.16
KRG90046	Soybean	nucleus	17.19	78.89
KRH58007	Soybean	nucleus	16.71	76.67
KRH25014	Soybean	cytosol, nucleus, plastid	69.98	72.07
KRH29911	Soybean	cytosol, nucleus, plastid	71.19	71.53
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	69.25	69.59
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	64.89	68.19
PGSC0003DMT400020800	Potato	nucleus	64.89	65.53
Solyc11g069460.1.1	Tomato	nucleus	64.16	64.01
AT2G28380.1	Thale cress	cytosol	64.89	61.75
Bra035704.1-P	Field mustard	nucleus	62.95	60.05
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	62.95	60.05
CDY30490	Canola	nucleus	62.95	59.91
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.5	59.07
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	61.26	58.84
CDY15737	Canola	cytosol	60.29	57.51
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	62.71	57.43
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	60.77	56.66
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	63.44	55.74
Zm00001d032679_P001	Maize	nucleus	57.63	46.21
Os10t0480500-01	Rice	cytosol, nucleus, plastid	57.38	46.11
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	57.14	45.38
HORVU1Hr1G041820.1	Barley	nucleus	57.14	44.78
TraesCS1B01G174000.1	Wheat	nucleus	56.42	44.21
TraesCS1D01G155300.1	Wheat	nucleus	56.66	43.98
VIT_08s0056g01550.t01	Wine grape	plastid	17.68	43.98
TraesCS1A01G157700.3	Wheat	nucleus	55.93	43.92
KXG38314	Sorghum	mitochondrion, nucleus	57.14	43.7
VIT_14s0068g01520.t01	Wine grape	nucleus	44.79	38.46
VIT_14s0030g01280.t01	Wine grape	nucleus	44.31	31.77
VIT_05s0020g01850.t01	Wine grape	nucleus	44.07	22.03
VIT_14s0006g01440.t01	Wine grape	nucleus	16.46	20.42
VIT_18s0001g07670.t01	Wine grape	nucleus	15.98	16.5

Protein Annotations

EntrezGene:100248336	wikigene:100248336	Gene3D:3.30.160.20	MapMan:35.1	EMBL:AM443687	ProteinID:CAN80689
ProteinID:CAN80689.1	ProteinID:CCB43673	ProteinID:CCB43673.1	UniProt:F6GU09	EMBL:FN594951	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035196	GO:GO:0040029
GO:GO:0070919	InterPro:IPR014720	EntrezGene:LOC100248336	wikigene:LOC100248336	PFAM:PF00035	PFscan:PS50137
PANTHER:PTHR10910	PANTHER:PTHR10910:SF141	SMART:SM00358	SUPFAM:SSF54768	TIGR:TC60232	UniParc:UPI00019835BC
ArrayExpress:VIT_06s0004g02810	EnsemblPlantsGene:VIT_06s0004g02810	EnsemblPlants:VIT_06s0004g02810.t01	unigene:Vvi.9484	RefSeq:XP_002285171	RefSeq:XP_002285171.1
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:3524238..3528798

Molecular Weight (calculated)

44845.6 Da

IEP (calculated)

10.076

GRAVY (calculated)

-0.409

Length

413 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPNYC TTLRQAEHSA AEVALNSLSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPQYTTFR SGLGHLPVFT GTVELAGITF TGEPAKNKKQ AEKNAAMAAW SSLKQLAKEA ANSSSETENN DELEQITIAR ALLNYRLKEK MAIANSPSGT
201: LSFPKKFPIQ NSRLFSPQLP PVATSKILPL ICQKTPPRNR PPSPTANDGS MPSSQPRSRP TSTTSSENPV PPSQPLALDV RAVRPQRFPA AGAVPYVPIR
301: QFRTPYHGIA PPVTIRNAVP VFSAPPSGLP PQVIRAPHMR IAPPVCVRQA VPVFAAPPVR KEDPLVVRKE DPSAASLPSL PTKSPAHVEE TGSATANDLQ
401: EFEAVKSLEQ LKI

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.