Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0030g01280.t01 | Wine grape | nucleus | 31.23 | 44.79 |
| VIT_06s0004g02810.t01 | Wine grape | cytosol, nucleus, plastid | 22.03 | 44.07 |
| VIT_08s0056g01550.t01 | Wine grape | plastid | 8.84 | 43.98 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 24.21 | 41.58 |
| GSMUA_Achr5P00420_001 | Banana | nucleus | 27.24 | 39.2 |
| Os05t0150400-01 | Rice | cytosol, nucleus | 27.0 | 36.98 |
| Zm00001d024861_P007 | Maize | nucleus | 22.88 | 36.77 |
| KXG21311 | Sorghum | nucleus | 24.82 | 35.78 |
| TraesCS1A01G091200.2 | Wheat | nucleus | 24.46 | 35.44 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 24.21 | 35.03 |
| TraesCS1B01G119000.1 | Wheat | nucleus | 24.33 | 34.78 |
| HORVU1Hr1G021530.1 | Barley | nucleus | 23.97 | 34.14 |
| VIT_14s0006g01440.t01 | Wine grape | nucleus | 8.11 | 20.12 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 8.6 | 17.75 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100261360 | wikigene:100261360 | EntrezGene:100266564 | wikigene:100266564 | Gene3D:3.30.160.20 |
| MapMan:35.1 | ProteinID:CBI26110 | ProteinID:CBI26110.3 | UniProt:D7T6I9 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| EMBL:FN595749 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR014720 | EntrezGene:LOC100261360 | wikigene:LOC100261360 | EntrezGene:LOC100266564 | wikigene:LOC100266564 |
| PFAM:PF00035 | PFAM:PF12937 | PFscan:PS50137 | PFscan:PS50181 | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF115 |
| SMART:SM00256 | SMART:SM00358 | SUPFAM:SSF54768 | SUPFAM:SSF81383 | UniParc:UPI0001BE2B70 | ArrayExpress:VIT_05s0020g01850 |
| EnsemblPlantsGene:VIT_05s0020g01850 | EnsemblPlants:VIT_05s0020g01850.t01 | unigene:Vvi.14765 | RefSeq:XP_002276323 | RefSeq:XP_002276323.1 | RefSeq:XP_002276654 |
| RefSeq:XP_002276654.1 | InterPro:dsRBD_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:3561975..3569589
Molecular Weight (calculated)
91701.0 Da
IEP (calculated)
9.184
GRAVY (calculated)
-0.436
Length
826 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKATVNFN GEVFESPTFC NTLRQAEHAA AEVALNVLSK NGPSKALAAK VLDETGVYKN LLQETAHRAG
101: LKLPVYTTVR SGPGHIPVFF CTVDIAKMSF TGEPAKTKKQ AQKNAAMAAW SALKRLSQAS SSTSSAPLES GGNDELEQVT VARYLASLQP PEANKSAQRD
201: GLLGQGSTPC RRDLMPNDNA ISLYSMHCRD WSHSAPLIQL AHQSWPKERA SQQQNHLLAL PSAPTTLPRP QMSPIIRSIF QPDHGPCFLP REQEPAPLSP
301: GIGPFLYFSN GSMPVPVSNL SQVTIQEIEE KPKVEQEWLN VDANSGCWKI NFPSNLSGLS LVEIPKCPIS PNSHSEPIQE ALQGKEEENS AGNSAQLGTN
401: QIQRLAWTSP RFADTRSSAG ASDEANLWLQ NQQFLDYLQS NIRSQNAPMA TYPGSSRVYT RPSAAPVTIR SSDASSIRKP RPMSSSLFVS APPPTRYAAP
501: TWSTRPTLEG AKYTGVRPCS RFMAPAVNIR SVVPVCSAPP AKDRAGGSQE ERAGRLQVQK LGRLIPSSFS NPKQGLSPKS MNQWNRIHNS LPYDIALKIA
601: SSLQASDLCS LGSCSRSWRE LWGSDPIWER LCRDRWSVQC MLGESSASEL HPPKEGWKSF YIKWHHEMAG RATDVVRFVE SRSSSESLEV GDHLKAIVGL
701: RDRQLGFKDV QIFLFKPKLN VLINLVGLQY CIQWLKVPAE HVMEAIQSCK ISERQVCVKW WKLGRWFYGF RLRDESHCRR VSLRDVAKED EVLWVLHRGA
801: IHEVLRVQIS IPSPSTTSWS CQSSQT
101: LKLPVYTTVR SGPGHIPVFF CTVDIAKMSF TGEPAKTKKQ AQKNAAMAAW SALKRLSQAS SSTSSAPLES GGNDELEQVT VARYLASLQP PEANKSAQRD
201: GLLGQGSTPC RRDLMPNDNA ISLYSMHCRD WSHSAPLIQL AHQSWPKERA SQQQNHLLAL PSAPTTLPRP QMSPIIRSIF QPDHGPCFLP REQEPAPLSP
301: GIGPFLYFSN GSMPVPVSNL SQVTIQEIEE KPKVEQEWLN VDANSGCWKI NFPSNLSGLS LVEIPKCPIS PNSHSEPIQE ALQGKEEENS AGNSAQLGTN
401: QIQRLAWTSP RFADTRSSAG ASDEANLWLQ NQQFLDYLQS NIRSQNAPMA TYPGSSRVYT RPSAAPVTIR SSDASSIRKP RPMSSSLFVS APPPTRYAAP
501: TWSTRPTLEG AKYTGVRPCS RFMAPAVNIR SVVPVCSAPP AKDRAGGSQE ERAGRLQVQK LGRLIPSSFS NPKQGLSPKS MNQWNRIHNS LPYDIALKIA
601: SSLQASDLCS LGSCSRSWRE LWGSDPIWER LCRDRWSVQC MLGESSASEL HPPKEGWKSF YIKWHHEMAG RATDVVRFVE SRSSSESLEV GDHLKAIVGL
701: RDRQLGFKDV QIFLFKPKLN VLINLVGLQY CIQWLKVPAE HVMEAIQSCK ISERQVCVKW WKLGRWFYGF RLRDESHCRR VSLRDVAKED EVLWVLHRGA
801: IHEVLRVQIS IPSPSTTSWS CQSSQT
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
Arabidopsis Description
DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.