Factsheet for GSMUA_Achr5P00420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68665	Soybean	nucleus	37.63	40.07
KRG96921	Soybean	nucleus	37.46	39.96
VIT_14s0030g01280.t01	Wine grape	nucleus	39.2	39.06
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	30.66	39.02
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	29.44	38.15
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	30.84	37.66
Zm00001d024861_P007	Maize	nucleus	33.45	37.35
TraesCS1A01G091200.2	Wheat	nucleus	35.89	36.14
TraesCS1D01G099700.1	Wheat	nucleus	35.89	36.08
HORVU1Hr1G021530.1	Barley	nucleus	36.41	36.03
TraesCS1B01G119000.1	Wheat	nucleus	36.24	35.99
KXG21311	Sorghum	nucleus	35.02	35.08
Os05t0150400-01	Rice	cytosol, nucleus	36.76	34.99
VIT_05s0020g01850.t01	Wine grape	nucleus	39.2	27.24
GSMUA_Achr4P21490_001	Banana	nucleus	17.94	26.21
GSMUA_Achr2P22850_001	Banana	cytosol	11.32	21.04
GSMUA_Achr7P01540_001	Banana	cytosol	9.58	20.45
GSMUA_Achr11P...	Banana	nucleus	11.67	17.91
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	9.93	15.83

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr5G00420_001	EnsemblPlants:GSMUA_Achr5P00420_001	EnsemblPlants:GSMUA_Achr5T00420_001	InterPro:IPR014720	UniProt:M0SUH1	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF142	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00029635BD
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

Putative double-stranded RNA binding motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G00420_001]

Coordinates

chr5:-:269918..273037

Molecular Weight (calculated)

62443.8 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.528

Length

574 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY ASIREGPDHA PRFKATVNFN GEAFESPTFC STLRQAEHSA AEVALNTLSK RGPSRSLAAK VLDETGIYKN LLQETAHRAG
101: LKLPVYTTVR SGPGHTPIFT CTVELAGMSF TGDPAKTKKQ AQKNAAMAAW SALKHSPRLG SSSSPSAPSL SESEKNEEQE PVILAHALAK LQRSEENWSS
201: SQNGRRRGQQ RSPPQKSMHP TSNVCFCPIP FQNLVYPDLS SESEFYQMWH QVHASPQQSH FSLTPHARDH RSFPILHYFY PSQVLHTPSV EQDPVSSLRC
301: STGSSPSLLV CFSDHPVSVA SGSWSQFTIQ QIHGEQNQRV GKEWLILPSS AEAYSALDVS GSSLRSDNIG DASTVQKSHE DQEKECSLGG AEAHLEEEAN
401: SSCHGFKSVA SASCPTMVQD PAGRTKMQER KTAERSQGKS YGWMPRASVW PGPSPPNHSL LYDLNSDSSP TQFSHGSPNS SSLDRKFRPF AVSASMRHIS
501: SALLHPSGLR DEAFRRQVPS PAAPVTIRTT IPVCSARAGA VNPDTLVSST SFVAPPVNVR SVVPVCSAPP VSET

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.