Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400022469 | Potato | nucleus | 22.39 | 27.16 |
| GSMUA_Achr7P01540_001 | Banana | cytosol | 18.32 | 26.77 |
| Solyc01g009190.1.1 | Tomato | nucleus | 27.74 | 24.66 |
| KRH46125 | Soybean | mitochondrion, nucleus | 21.63 | 24.15 |
| KRG98822 | Soybean | nucleus | 16.03 | 23.25 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 25.7 | 22.8 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 24.94 | 21.73 |
| GSMUA_Achr2P22850_001 | Banana | cytosol | 16.79 | 21.36 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 24.43 | 20.43 |
| GSMUA_Achr5P00420_001 | Banana | nucleus | 26.21 | 17.94 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 13.49 | 14.72 |
| GSMUA_Achr11P... | Banana | nucleus | 13.99 | 14.71 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P21490_001 | EnsemblPlants:GSMUA_Achr4T21490_001 | EnsemblPlantsGene:GSMUA_Achr4G21490_001 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF114 |
| PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI000296AC80 |
| UniProt:M0SQW2 | MapMan:35.1 | : | : | : | : |
Description
Putative double-stranded RNA binding motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G21490_001]
Coordinates
chr4:+:21960031..21965885
Molecular Weight (calculated)
43266.7 Da
IEP (calculated)
6.795
GRAVY (calculated)
-0.537
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKSRLQELC QRRHWELPQY TASRDGPDHS PLFRATVTVN GAAFHSPDDS CSSKQAQDRA AQVAFEQLSA EDPPTAPSKP SSVFLADSQV SYKNQLQIYL
101: QKKNKGLPSY FSVHDGSPIR HFKAIDDAVY KNLLQELMQK HGFPLPKYTT ISYGESHIPS FSSTVEIKGE FFKGDVAKTK KQAEMNAAKV AWSHLKEEIS
201: SRFPSDLLAK WQVLVASEPV ISRSDTITNL KHLKPSVDAH KMDDIISDGH GEASGLTVSP PCDQIINSAK EAMNTDGSFR HSASYTDEHN PEITINKKDT
301: VSLVHKPEAV DVMKNGKTLQ GAMSDDGSSA LSSNSNGSNI HAKTATEPPI GRNTVLLCNR VRIYPNKSDL VLPEDAIPLP CSDDSWVAVS FDL
101: QKKNKGLPSY FSVHDGSPIR HFKAIDDAVY KNLLQELMQK HGFPLPKYTT ISYGESHIPS FSSTVEIKGE FFKGDVAKTK KQAEMNAAKV AWSHLKEEIS
201: SRFPSDLLAK WQVLVASEPV ISRSDTITNL KHLKPSVDAH KMDDIISDGH GEASGLTVSP PCDQIINSAK EAMNTDGSFR HSASYTDEHN PEITINKKDT
301: VSLVHKPEAV DVMKNGKTLQ GAMSDDGSSA LSSNSNGSNI HAKTATEPPI GRNTVLLCNR VRIYPNKSDL VLPEDAIPLP CSDDSWVAVS FDL
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
Arabidopsis Description
DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.