Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009190.1.1 | Tomato | nucleus | 82.72 | 60.63 |
| KRH46125 | Soybean | mitochondrion, nucleus | 30.86 | 28.41 |
| KRG98822 | Soybean | nucleus | 21.6 | 25.83 |
| GSMUA_Achr4P21490_001 | Banana | nucleus | 27.16 | 22.39 |
| PGSC0003DMT400088113 | Potato | nucleus | 10.19 | 19.19 |
| PGSC0003DMT400014406 | Potato | nucleus | 12.65 | 18.98 |
| PGSC0003DMT400020800 | Potato | nucleus | 21.3 | 16.87 |
| PGSC0003DMT400085647 | Potato | cytosol, nucleus | 13.58 | 16.6 |
| PGSC0003DMT400060309 | Potato | cytosol, nucleus, plastid | 20.06 | 12.85 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 15.43 | 12.32 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400022469 | EnsemblPlantsGene:PGSC0003DMG400008709 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF114 | PFAM:PF00035 |
| PFscan:PS50137 | PGSC:PGSC0003DMG400008709 | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI000296AF91 | UniProt:M1AGS0 |
| MapMan:35.1 | : | : | : | : | : |
Description
DsRNA-binding protein ODB1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008709]
Coordinates
chr1:+:6191849..6194330
Molecular Weight (calculated)
36265.9 Da
IEP (calculated)
7.949
GRAVY (calculated)
-0.532
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKSKLQELC HSKKWALPQY CCMRDGSDHN PKFKASVIVN GINFDSLPLR KSSKEAHNEA AKFAFLHFTN DGSLPTAEDC RLTKIDASLQ DKSTSEIKQG
101: GSLLAIEDSG LTKTEETCQH LQDHLNTSEI KQEESHYQYK TKLQMYAKRK NLGLPVYCSK RMSSAQGLYF EATVTVAGEL FKSPGAYKSS EEAEESVAQF
201: ALMKLVTVAL EKSNTGSYKS FLQELAQQEE ICLPRYKTTR AGEPHNLTFF SSVEIEAEIF HGDGAKSKKQ AEENAAKVAY TALTKCKYSS STFCIRLYMS
301: QSDIIGRASY GYIPFGQLDY LRSG
101: GSLLAIEDSG LTKTEETCQH LQDHLNTSEI KQEESHYQYK TKLQMYAKRK NLGLPVYCSK RMSSAQGLYF EATVTVAGEL FKSPGAYKSS EEAEESVAQF
201: ALMKLVTVAL EKSNTGSYKS FLQELAQQEE ICLPRYKTTR AGEPHNLTFF SSVEIEAEIF HGDGAKSKKQ AEENAAKVAY TALTKCKYSS STFCIRLYMS
301: QSDIIGRASY GYIPFGQLDY LRSG
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.