Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400022469 | Potato | nucleus | 60.63 | 82.72 |
| KRH46125 | Soybean | mitochondrion, nucleus | 24.21 | 30.4 |
| KRG98822 | Soybean | nucleus | 17.87 | 29.15 |
| GSMUA_Achr4P21490_001 | Banana | nucleus | 24.66 | 27.74 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 17.87 | 27.43 |
| Solyc03g118950.1.1 | Tomato | cytosol, nucleus, plastid | 9.95 | 22.22 |
| Solyc11g069460.1.1 | Tomato | nucleus | 17.65 | 18.84 |
| Solyc02g091460.2.1 | Tomato | nucleus | 6.11 | 14.75 |
| Solyc05g056100.2.1 | Tomato | cytosol, nucleus, plastid | 16.06 | 12.84 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 11.76 | 12.01 |
Protein Annotations
| EnsemblPlants:Solyc01g009190.1.1 | EnsemblPlantsGene:Solyc01g009190.1 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF114 | PFAM:PF00035 |
| PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0002763519 | UniProt:K4ATB5 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:3237158..3239698
Molecular Weight (calculated)
48940.6 Da
IEP (calculated)
6.365
GRAVY (calculated)
-0.545
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKSKLQELC HSKKWALPQY CCMRDGADHN PKFKASVVVN GINFDSLPLR KSSKEAHNEA AKFAFLHFTN EDTVPTKVDG ECENLQDRST SEIKKGGSLP
101: TIEDSGLTKT EEACQHLQDH RNTSEIKQED SHYQYKKKLQ MYAKRKNLGV PVYCNKKMSS AQGLYFEATV TVAGELFKNP GAYKSSEEAE ESVAQFALMK
201: LVTVDLEKSN TGSYKSFLQE LAQQEEICLP RYKTIGAGEP HNLTFFASVE IEAEIFHGDG AKSKKQAEEN AAKVAYTALT KCKSIYAGNP STVSAESEGE
301: IVKTERIMES LSIFISEEKF RDEEEIVYSK STSPKSIGAD IVNASSLTLG VQELSVNEKT PSSVESLLHL PSKTTPSKSP TVSNADSSAR RTAETESYLL
401: SNRIRVYKSI PDGVLPTGTT VLPIAEDKWS VVRLEFLTEK CG
101: TIEDSGLTKT EEACQHLQDH RNTSEIKQED SHYQYKKKLQ MYAKRKNLGV PVYCNKKMSS AQGLYFEATV TVAGELFKNP GAYKSSEEAE ESVAQFALMK
201: LVTVDLEKSN TGSYKSFLQE LAQQEEICLP RYKTIGAGEP HNLTFFASVE IEAEIFHGDG AKSKKQAEEN AAKVAYTALT KCKSIYAGNP STVSAESEGE
301: IVKTERIMES LSIFISEEKF RDEEEIVYSK STSPKSIGAD IVNASSLTLG VQELSVNEKT PSSVESLLHL PSKTTPSKSP TVSNADSSAR RTAETESYLL
401: SNRIRVYKSI PDGVLPTGTT VLPIAEDKWS VVRLEFLTEK CG
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.