CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98822	Soybean	nucleus	52.84	68.63
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	15.91	36.13
KRG90046	Soybean	nucleus	9.09	35.56
KRH58007	Soybean	nucleus	8.81	34.44
PGSC0003DMT400022469	Potato	nucleus	28.41	30.86
Solyc01g009190.1.1	Tomato	nucleus	30.4	24.21
KRH63090	Soybean	nucleus	9.66	21.79
GSMUA_Achr4P21490_001	Banana	nucleus	24.15	21.63
KRH62980	Soybean	nucleus	10.51	18.59
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	19.03	17.05
KRH25014	Soybean	cytosol, nucleus, plastid	19.03	16.71
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	19.03	16.3
KRH29911	Soybean	cytosol, nucleus, plastid	19.03	16.3
KRG96921	Soybean	nucleus	20.74	13.57
KRH57881	Soybean	nucleus	19.32	13.49
KRH68665	Soybean	nucleus	20.45	13.36
KRH01275	Soybean	nucleus	12.22	12.87
KRH30959	Soybean	mitochondrion	9.94	12.68
KRH62246	Soybean	nucleus	12.78	12.53
KRH52961	Soybean	nucleus	12.78	12.4
KRH15123	Soybean	nucleus	13.07	10.02
KRH73012	Soybean	nucleus	7.1	8.56

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	EMBL:ACUP02005325	EnsemblPlantsGene:GLYMA_08G313900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	UniProt:K7LA23	EnsemblPlants:KRH46125	ProteinID:KRH46125
ProteinID:KRH46125.1	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF143	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI000294A24A	InterPro:dsRBD_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:43406437..43409905

Molecular Weight (calculated)

39066.0 Da

IEP (calculated)

5.812

GRAVY (calculated)

-0.506

Length

352 amino acids

Sequence
(BLAST)

001: MYKAKLQELC HQRKWGLPRY SAMKDGPDHM PSFKASVYVN RVTFTSGAFR SLKEAKNHAA MLAFFSFSSG TPPISIPFLG SSTQTSEHDI NEQIGEVKPR
101: DVPIPAQSSV IIDDMDRYCK NQPQNNAQKN NLDPPVFTCK TEDLPPTNEQ SVESPDFFNT IKEVDQAAAK LDLMSLSPDN FEKASILGDS GSFKTSLLRL
201: SERQDFHKPT YKTMQAGSPH MPTFFSTVEV EGVEFHGKGG RSKKQAEEDA AKIAYIALKE CGLNMYAAFS PSQIENKAVQ SIHNLDELLD LDLNEILLAN
301: VKVRNEVHNP SFLQSPEEDM INNRNSSSCE PVISSSPKSS PLSHIDVSCL SI

Best Arabidopsis Sequence Match ( AT3G26932.1 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.