CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	KRG89812	AT2G41090.1	17360592
AT2G28380.1	KRG94975	AT2G41090.1	17360592
AT2G28380.1	KRH18664	AT2G41090.1	17360592
AT2G28380.1	KRG89812	AT2G41100.1	17360592
AT2G28380.1	KRG94975	AT2G41100.1	17360592
AT2G28380.1	KRH18664	AT2G41100.1	17360592
AT2G28380.1	KRH31638	AT4G14640.1	17360592
AT2G28380.1	KRH69070	AT4G14640.1	17360592
AT2G28380.1	KRG89812	AT5G21274.1	17360592
AT2G28380.1	KRG94975	AT5G21274.1	17360592
AT2G28380.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58007	Soybean	nucleus	47.1	81.11
KRG90046	Soybean	nucleus	46.45	80.0
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	90.32	35.62
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	90.32	34.06
KRH25014	Soybean	cytosol, nucleus, plastid	85.16	32.92
KRH29911	Soybean	cytosol, nucleus, plastid	85.16	32.12
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	85.16	31.96
PGSC0003DMT400020800	Potato	nucleus	83.23	31.54
Solyc11g069460.1.1	Tomato	nucleus	81.94	30.68
AT2G28380.1	Thale cress	cytosol	83.87	29.95
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	82.58	29.77
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	82.58	29.77
CDY15737	Canola	cytosol	82.58	29.56
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	81.94	29.33
Bra035704.1-P	Field mustard	nucleus	81.94	29.33
CDY30490	Canola	nucleus	81.94	29.26
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	80.65	28.22
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	81.29	27.94
KRH63090	Soybean	nucleus	26.45	26.28
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	78.71	25.96
Zm00001d032679_P001	Maize	nucleus	76.77	23.11
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	76.77	22.88
Os10t0480500-01	Rice	cytosol, nucleus, plastid	75.48	22.76
KRH62980	Soybean	nucleus	29.03	22.61
HORVU1Hr1G041820.1	Barley	nucleus	75.48	22.2
TraesCS1A01G157700.3	Wheat	nucleus	74.84	22.05
KXG38314	Sorghum	mitochondrion, nucleus	76.77	22.04
TraesCS1B01G174000.1	Wheat	nucleus	74.84	22.01
TraesCS1D01G155300.1	Wheat	nucleus	74.84	21.8
KRH68665	Soybean	nucleus	69.68	20.04
KRG96921	Soybean	nucleus	69.03	19.89
KRH46125	Soybean	mitochondrion, nucleus	36.13	15.91
KRH62246	Soybean	nucleus	35.48	15.32
KRH52961	Soybean	nucleus	35.48	15.15
KRH57881	Soybean	nucleus	48.39	14.88
KRG98822	Soybean	nucleus	25.16	14.39
KRH01275	Soybean	nucleus	27.1	12.57
KRH30959	Soybean	mitochondrion	21.94	12.32
KRH15123	Soybean	nucleus	34.19	11.55
KRH73012	Soybean	nucleus	16.77	8.9

Protein Annotations

EMBL:ACUP02003895	EnsemblPlants:KRH55141	EnsemblPlantsGene:GLYMA_06G233100	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
PFAM:PF00035	PFscan:PS50137	ProteinID:KRH55141	ProteinID:KRH55141.1	SEG:seg	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI0006EDA69A	UniProt:A0A0R0JT34	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:+:36990640..36991409

Molecular Weight (calculated)

17360.9 Da

IEP (calculated)

10.008

GRAVY (calculated)

-0.415

Length

155 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY MSIREGPNHA PRFKATIKFN GEIFETPHYC STLRQAEHSA AEVPLNSLSH RGPSHSLATK ILDETGVYKN LVQEIAQRVG
101: APLPHYITYR SGLGHLPIFI RIVELTGITF TGEPAKNKKQ AEKNAAMAAW SALKR

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.