Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRH57881 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62800.1 | KRH57881 | AT3G62800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0056g01550.t01 | Wine grape | plastid | 19.05 | 57.83 |
| KRH55141 | Soybean | cytosol, mitochondrion, nucleus, plastid | 14.88 | 48.39 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 24.8 | 43.4 |
| EER88251 | Sorghum | cytosol, mitochondrion, nucleus | 19.84 | 41.15 |
| KRH58007 | Soybean | nucleus | 7.14 | 40.0 |
| EES16051 | Sorghum | cytosol | 15.28 | 38.89 |
| KRG90046 | Soybean | nucleus | 6.94 | 38.89 |
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 18.06 | 36.99 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 12.9 | 36.93 |
| Os01t0772000-01 | Rice | mitochondrion, nucleus | 27.78 | 31.75 |
| CDX76663 | Canola | cytosol | 20.83 | 31.34 |
| Bra007702.1-P | Field mustard | nucleus | 20.44 | 31.21 |
| CDY11449 | Canola | nucleus | 20.44 | 31.12 |
| AT3G62800.1 | Thale cress | nucleus | 21.63 | 30.7 |
| KXG33474 | Sorghum | mitochondrion | 28.97 | 28.97 |
| KRH62980 | Soybean | nucleus | 9.92 | 25.13 |
| KRH63090 | Soybean | nucleus | 7.54 | 24.36 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 24.8 | 21.89 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 23.41 | 21.65 |
| KRH25014 | Soybean | cytosol, nucleus, plastid | 17.06 | 21.45 |
| KRH22885 | Soybean | cytosol, mitochondrion, nucleus, plastid | 16.47 | 21.12 |
| KRH26403 | Soybean | cytosol, mitochondrion, nucleus, plastid | 16.87 | 20.68 |
| KRH29911 | Soybean | cytosol, nucleus, plastid | 16.87 | 20.68 |
| KRG98822 | Soybean | nucleus | 11.11 | 20.66 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 24.6 | 20.46 |
| KRH62246 | Soybean | nucleus | 14.29 | 20.06 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 24.01 | 19.93 |
| KRH52961 | Soybean | nucleus | 14.29 | 19.83 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 23.81 | 19.8 |
| KRH01275 | Soybean | nucleus | 13.1 | 19.76 |
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 23.41 | 19.47 |
| KRH46125 | Soybean | mitochondrion, nucleus | 13.49 | 19.32 |
| KRH30959 | Soybean | mitochondrion | 8.93 | 16.3 |
| KRH68665 | Soybean | nucleus | 15.87 | 14.84 |
| KRG96921 | Soybean | nucleus | 15.28 | 14.31 |
| KRH15123 | Soybean | nucleus | 12.7 | 13.94 |
| KRH73012 | Soybean | nucleus | 7.14 | 12.33 |
Protein Annotations
| EMBL:ACUP02003067 | EnsemblPlants:KRH57881 | EnsemblPlantsGene:GLYMA_05G090000 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | ncoils:Coil | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF114 | PFAM:PF00035 | PFscan:PS50137 | ProteinID:KRH57881 | ProteinID:KRH57881.1 | SEG:seg |
| SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0006EDBBEF | UniProt:A0A0R0JYD0 | MapMan:16.10.1.4.1 | : |
Description
hypothetical protein
Coordinates
chr5:-:19949326..19966599
Molecular Weight (calculated)
55150.9 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.602
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKTRLQELC QRRSWTLPTY DNSREGPDHN PRFTSTVNVN GVSFHTPSPT RSAKQAQNDA AMLAFLHFSP PSPSTSCPTF PQHSLSISAL SSFPQPSLFA
101: SSSGSPDPSS VVDDILLTNG VLQPKLEEVC QTSQISGPVI AVRDTITAED QKNMLHLYKN QLQSYVQKNN LSLPVYSSEW EGPPHAMRFK CKVTVDGQTY
201: ESDKFYSTLK DAEHAAAEAA LISLSPGRVQ EGHVGLYKNL LQELAQKEGF RLPIYNTNKS GEAHMPIFVS QVEVEGELFT GEEAKSKKQA EMSAAKVAYM
301: ALKECKGKSD QISFFSLSVH QGQTHEFSPD CSEANVITGL KHHANPKSPV SPGLVDRNQH NKDKGKSDKS SSFPFSTHKG QAPEFSSDHS ESNVVTALQY
401: NADPNSLVDP GLVTWNQHSK DKLKNVSSSS ENTNGCTEDS SLSSDKSAPS LSGSTKVVSD SSNTYSTAVE RVVVYSRKTN VEIEDGGTIL PISDDRWVAY
501: SYSH
101: SSSGSPDPSS VVDDILLTNG VLQPKLEEVC QTSQISGPVI AVRDTITAED QKNMLHLYKN QLQSYVQKNN LSLPVYSSEW EGPPHAMRFK CKVTVDGQTY
201: ESDKFYSTLK DAEHAAAEAA LISLSPGRVQ EGHVGLYKNL LQELAQKEGF RLPIYNTNKS GEAHMPIFVS QVEVEGELFT GEEAKSKKQA EMSAAKVAYM
301: ALKECKGKSD QISFFSLSVH QGQTHEFSPD CSEANVITGL KHHANPKSPV SPGLVDRNQH NKDKGKSDKS SSFPFSTHKG QAPEFSSDHS ESNVVTALQY
401: NADPNSLVDP GLVTWNQHSK DKLKNVSSSS ENTNGCTEDS SLSSDKSAPS LSGSTKVVSD SSNTYSTAVE RVVVYSRKTN VEIEDGGTIL PISDDRWVAY
501: SYSH
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.