CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97157
KRH10835
KRH11802
KRH20483
KRH21480
KRH36816
KRH36818
KRH44717
KRH50009
KRH52961
KRH56284
KRH62246
KRH62750

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	KRH52961	AT1G09700.1	15821876
AT1G09700.1	KRH62246	AT1G09700.1	15821876
AT1G09700.1	KRH44717	AT2G27100.1	23141542
AT1G09700.1	KRH56284	AT2G27100.1	23141542
AT1G09700.1	KRH62750	AT2G27100.1	23141542
AT1G09700.1	KRG97157	AT3G03300.1	15821876
AT1G09700.1	KRH11802	AT3G03300.1	15821876
AT1G09700.1	KRH36816	AT3G03300.1	15821876
AT1G09700.1	KRH36818	AT3G03300.1	15821876
AT1G09700.1	KRH10835	AT4G21670.1	23141542
AT1G09700.1	KRH20483	AT4G21670.1	23141542
AT1G09700.1	KRH21480	AT4G21670.1	23141542
AT1G09700.1	KRH50009	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52961	Soybean	nucleus	94.99	93.94
CDX93488	Canola	plastid	42.9	56.0
Bra019999.1-P	Field mustard	plastid	42.62	55.84
Bra030793.1-P	Field mustard	cytosol	42.62	55.04
CDY20678	Canola	cytosol	42.06	54.51
CDX94957	Canola	cytosol, nucleus, plastid	41.5	52.65
CDY31070	Canola	endoplasmic reticulum, golgi	42.62	47.66
VIT_18s0001g07670.t01	Wine grape	nucleus	50.14	45.0
GSMUA_Achr11P...	Banana	nucleus	41.78	40.11
OQU82704	Sorghum	cytosol, nucleus	35.93	39.21
AT1G09700.1	Thale cress	plastid	44.57	38.19
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	41.78	36.95
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	15.32	35.48
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	40.95	33.95
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	33.15	33.06
Os05t0307400-01	Rice	cytosol	40.11	32.95
KXG22802	Sorghum	mitochondrion	38.44	31.94
Os11t0109900-01	Rice	cytosol	41.5	31.5
Zm00001d005065_P002	Maize	cytosol	36.49	30.18
KRH63090	Soybean	nucleus	13.09	30.13
TraesCS4D01G132400.1	Wheat	cytosol	33.7	29.66
KRG90046	Soybean	nucleus	7.24	28.89
KRH58007	Soybean	nucleus	7.24	28.89
TraesCS4A01G180400.1	Wheat	cytosol	32.59	28.75
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	32.59	28.68
KRH62980	Soybean	nucleus	15.32	27.64
TraesCS5D01G143500.2	Wheat	nucleus	39.0	26.52
TraesCS5B01G148100.2	Wheat	nucleus	38.44	26.04
TraesCS5A01G149400.2	Wheat	mitochondrion	38.72	25.0
HORVU5Hr1G047100.5	Barley	nucleus	38.72	24.26
KRH01275	Soybean	nucleus	17.83	19.16
KRH30959	Soybean	mitochondrion	13.93	18.12
KRH25014	Soybean	cytosol, nucleus, plastid	17.55	15.71
KRH29911	Soybean	cytosol, nucleus, plastid	17.55	15.33
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	17.55	15.33
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	16.71	15.27
KRH73012	Soybean	nucleus	12.26	15.07
KRH15123	Soybean	nucleus	19.22	15.03
KRH57881	Soybean	nucleus	20.06	14.29
Os12t0109900-02	Rice	cytosol	18.11	14.07
KRH68665	Soybean	nucleus	19.22	12.8
KRH46125	Soybean	mitochondrion, nucleus	12.53	12.78
KRG98822	Soybean	nucleus	9.47	12.55
KRG96921	Soybean	nucleus	18.38	12.27

Protein Annotations

EntrezGene:100806833	MapMan:16.10.2.1.2	Gene3D:3.30.160.20	EMBL:ACUP02002227	InterPro:DRB	EnsemblPlantsGene:GLYMA_04G095700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0030422	GO:GO:0031053	GO:GO:0031054	GO:GO:0040029
GO:GO:0090502	UniProt:I1JV80	InterPro:IPR014720	EnsemblPlants:KRH62246	ProteinID:KRH62246	ProteinID:KRH62246.1
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI0001BA87AF	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8521259..8525328

Molecular Weight (calculated)

39102.8 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.587

Length

359 amino acids

Sequence
(BLAST)

001: MPTNEDFQSV SNCYVFKSRL QEYAQKAGLP TPVYETIKEG PSHEPSFRST VIVNDVRYDS LPGFFNRKAA EQSAAEVALV ELVKSNAVNQ SITQPVHETG
101: LCKNLLQEYA QKMNYAMPMY QCKKDETPGR ASVFSCTVDI GGILYIGGAA KTKKEAEIKA ARTALLAIQS SASHASENQV GHPQLTVLPC RKRATSSVAI
201: ADENSNPPKP KKARFKRKSS KRKPSRDKMG QIHTENLGIG EIINHEVETH ASVNGESGLL EKKTETFTSE ATNNFENGVS VNYQEKETLA GESSFAVNSQ
301: EGIFENGKST ELYSKENNLG TVVTELSSAS NGGIPEPSVE VNKQQCNGEM VSDHCVVGD

Best Arabidopsis Sequence Match ( AT1G09700.1 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.