CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 5
extracellular 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009
KRH52961
KRH62246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	KRH52961	AT1G09700.1	23141542
AT2G27100.1	KRH62246	AT1G09700.1	23141542
AT2G27100.1	KRH10835	AT4G21670.1	23141542
AT2G27100.1	KRH20483	AT4G21670.1	23141542
AT2G27100.1	KRH21480	AT4G21670.1	23141542
AT2G27100.1	KRH50009	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62750	Soybean	nucleus	92.86	93.25
KRH44717	Soybean	nucleus	80.11	79.78
VIT_13s0047g00310.t01	Wine grape	nucleus	58.12	70.82
GSMUA_Achr7P19610_001	Banana	nucleus	52.38	69.0
GSMUA_Achr6P01800_001	Banana	nucleus	52.1	68.76
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	39.36	61.62
HORVU7Hr1G052570.1	Barley	nucleus	45.1	61.1
Solyc01g009090.2.1	Tomato	nucleus	63.03	60.16
CDX77068	Canola	nucleus	57.7	59.71
Bra034322.1-P	Field mustard	nucleus	57.84	59.68
AT2G27100.1	Thale cress	nucleus	60.08	59.58
HORVU0Hr1G020790.1	Barley	nucleus	36.97	59.33
GSMUA_Achr10P...	Banana	nucleus	59.52	57.9
TraesCS6A01G119000.1	Wheat	nucleus	40.48	57.8
Zm00001d047626_P001	Maize	cytosol	8.82	57.8
CDX71472	Canola	nucleus	56.58	57.47
HORVU7Hr1G097860.2	Barley	plastid	55.74	57.43
CDY04478	Canola	nucleus	56.86	57.18
Bra012034.1-P	Field mustard	nucleus	56.86	57.18
TraesCS7D01G416100.1	Wheat	nucleus	56.02	57.14
TraesCS7A01G423200.1	Wheat	nucleus	56.02	57.14
TraesCS7B01G323700.2	Wheat	nucleus	55.46	56.57
Zm00001d049767_P001	Maize	extracellular, nucleus	48.46	55.1
HORVU6Hr1G021620.2	Barley	nucleus	41.18	54.95
EES15338	Sorghum	nucleus	49.16	54.67
Os06t0698859-01	Rice	nucleus	55.18	54.5
TraesCS7B01G150500.1	Wheat	nucleus	49.02	54.43
EER90312	Sorghum	nucleus	54.34	54.42
TraesCS7A01G254300.1	Wheat	nucleus	48.88	54.28
TraesCS7D01G252800.1	Wheat	nucleus	48.88	54.28
Os08t0517300-01	Rice	plastid	48.74	53.79
Zm00001d036495_P001	Maize	nucleus	54.2	53.6
Zm00001d014655_P001	Maize	nucleus, plastid	55.18	53.1
Zm00001d046965_P001	Maize	nucleus	20.17	51.8
Zm00001d031542_P001	Maize	nucleus	46.64	49.85
GSMUA_Achr5P22680_001	Banana	extracellular	13.31	49.22
Zm00001d006696_P001	Maize	nucleus	16.11	48.52
Os02t0149600-01	Rice	nucleus	44.82	48.05
Zm00001d046814_P001	Maize	cytosol	11.62	44.62
TraesCS6B01G147000.1	Wheat	nucleus	46.08	43.98
TraesCS6D01G108900.1	Wheat	nucleus	44.96	42.57
Zm00001d018785_P001	Maize	cytosol	15.83	41.09
KXG29470	Sorghum	nucleus, plastid	42.86	37.68

Protein Annotations

EntrezGene:100817569	MapMan:15.5.15	MapMan:16.10.2.1.3	EMBL:ACUP02004108	InterPro:Arsenite-R_2	InterPro:DUF3546
EnsemblPlantsGene:GLYMA_06G314900	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:K7KYH7
EnsemblPlants:KRH56284	ProteinID:KRH56284	ProteinID:KRH56284.1	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028
PANTHER:PTHR13165	PANTHER:PTHR13165:SF2	UniParc:UPI0002950CD6	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:50379739..50387341

Molecular Weight (calculated)

80105.4 Da

IEP (calculated)

7.850

GRAVY (calculated)

-1.089

Length

714 amino acids

Sequence
(BLAST)

001: MAEVINNMPP ESLDQSPSSS APPPPPPPPP ASSSAPADDL PPPPLPPPPR RRDRRDDRDF DRHPNRSRDY YDRDRDFKRR RSPSPGYRDR RYSPPPPSRR
101: SPPPYKRSRR GSPRGGGYGP DDRFGYDYSG GYERGAGGRT GYADEKSYGR LVHRSAGGYH NGISDVDNSR GYADLSSGGA QREGLMSYKQ FIQELEDDVL
201: PAEAERRYQE YKSEYISTQK RAYFNAHKDE EWLKDKYHPT NLLTVIERRN ENARRLAKDF LLDLQSGTLD LNPGLNSTSS GKSGQASEPN SEEETDGKRR
301: RHVRGPNKDN DFSAAPKAHP ISSEPRRIQA DIQQAQAVVR KLDREKGIED NILCTSDHNK NDDKAHSGSV GPIVIIRGLT SVKGLEGVEL LDTLITYLWR
401: IHGVDYYGMV ETNEAKGFRH VRPEGAGHEE TSKSGSDWEK KLDSFWHGRL NGQDPLEVMT AKEKIDAAAT DVLDPHVRKI RDEKYGWKYG CGAKGCTKLF
501: HAAEFVHKHL KLKHPEIVME LTSKMREDLY FQNYMNDPDA PGGMPVMQQP QKDRPLKRRL GGLEGRLKDD RGNRRDQDRS DRMNGDRPDG SPSHERQMGN
601: HDEAMYDAYG GPGVPAFTSD MPPPPVLMPV PGAGPLGPFV PAPPEVAMQM FREQGGPTSF DASGRKMRSG PHMGGPAPII AVPPSFRPDP RRMRSYEDLD
701: APEDEVTVID YRSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.